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View Structure Prediction Details

Protein: gi|115447029, gi...
Organism: Oryza sativa Japonica Group
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115447029, gi....

Description E-value Query
Range
Subject
Range
gi|92871680 - gi|92871680|gb|ABE80618.1| hypothetical protein MtrDRAFT_AC136288g4v1 [Medicago truncatula]
298.0 [0..31] [293..35]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTAPSRTG RALALLPVLV LLLLVCSPAA SAGEQKGVCV SPGGRFPAFS SEGKRPGRAA  60
   61 KGRRDLALCR VFRQNTCCDV SQTFSALLSV RKLASTGEGS QECLHLWELL ECSICDPRVG 120
  121 VRPGPPVICA SFCDMVFKAC SEAYFAIDVK TQALSPCGLG DILCGKAHKW VSNGTELCRS 180
  181 AGFSVQALET 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 1ijyA
Description: Frizzled 8 (FZ8)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [191-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSGGVDDTFC YGGKASFDAI SSSWTSSKER PVLSDVASWN LEDFRRWARE MPASERVSWA  60
   61 IGGMVLTAGL IFISKRKSYI PGQKQAAIAR NVRKLESRVN PQQLRRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle