YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115446411, gi...
Organism:	Oryza sativa Japonica Group
Length:	986 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115446411, gi....

Description	E-value	Query Range	Subject Range
gi\|32492578, gi\|... - gi\|32966012\|gb\|AAP85378.1\| RNA binding protein Rp120 [Oryza sativa (japonica cultivar-group)], gi\|32...	767.0	[0..1]	[986..1]
gi\|92871102 - gi\|92871102\|gb\|ABE80217.1\| Tudor; Staphylococcus nuclease subtype [Medicago truncatula]	731.0	[0..2]	[986..3]
gi\|21929220 - gi\|21929220\|dbj\|BAC06184.1\| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]	710.0	[0..3]	[986..4]
gi\|114144940 - gi\|114144940\|emb\|CAL38976.1\| TUDOR protein with multiple SNc domains [Picea abies]	699.0	[0..1]	[986..1]
gi\|18086332, gi\|... - gi\|22326646\|ref\|NP_196352.2\| tudor domain-containing protein / nuclease family protein [Arabidopsis ...	685.0	[0..3]	[986..2]
gi\|109068090 - gi\|109068090\|ref\|XP_001088001.1\| PREDICTED: staphylococcal nuclease domain containing 1 [Macaca mula...	592.0	[0..5]	[980..273]
SND1_PONPY - Staphylococcal nuclease domain-containing protein 1 - Pongo pygmaeus (Orangutan) SND1_PONAB - Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1	586.0	[0..5]	[980..14]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASATGASGW LRGKVKGVTS GDCLLIMGST KADVPPPEKS ITLSYLMAPR LARRGGVDEP  60
   61 FAWESREFLR KLCIGKEVTF RVDYTAPNVG REFGTVYLGD KNVAYSIIAA GWARVKEQGP 120
  121 KGGEPSPYLT ELLRLEEVAK QQGLGRWSKE PGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	2f0uA
Description:	No description for 2f0uA was found.

Predicted Domain #2

Region A:
Residues: [154-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEESIRDLPP SAIGEASGFD AKGFAVANKG KSLEAIVEQV RDGSTVRVYL LPSFQFVQIY  60
   61 VAGVQSPSMG RRPPNPTVVA AAESTADGAT NGGDSEEAPA PLTTAQRLAA AAVSTEIPPD 120
  121 RFGIEAKHFT ETRVLNRDVR IVVEGTDSFS NIIGSVYYSD GDTLKDLALE LVENGLAKYV 180
  181 EWSANMMDVD AKIKLKNAEL QAKKDQLRIW TGFKPPVTNS KPI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.39794
Match:	PF00565.9
Description:	No description for PF00565.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [377-986]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDQKFTGKVV EVVSGDCIIV ADDAAPYGSP SAERRVNLSS IRAPKMGNPR RDEKPDNFAR  60
   61 EAKEFLRTRL IGKQVTVEME YSRRISTVDG QPTTNTADAR VLDYGSVFLG SPSQADGDDV 120
  121 SSIPSSGNQP GINIAETLLS RGFARTSKHR DYEERSHYFD LLLAAESRAE KAKKGVHSAK 180
  181 ESPVMHITDL TTVSAKKARD FLPFLQRNRR HSAIVEYVFS GHRFKLTIPK ETCSIAFSFS 240
  241 GVRCPGKDEP YSNEAIALMR RRILQRDVEI EVEAVDRTGT FLGSLWESKT NMASVLLEAG 300
  301 LAKLSSFGLD RIPDANVLMR AEQSAKQQKL KIWENYVEGE EVSNGSASES KQKEILKVVV 360
  361 TEVLGGGKFY VQTVGDHRVA SIQQQLASLK LKDAPVIGAF NPVKGEIVLA QFSADNSWNR 420
  421 AMIVNGPRGA VSSQDDKFEV FYIDYGNQEV VPYSRIRPAD PSISSSPALA QLCSLAFIKV 480
  481 PNLEDDFGHE AAVYLNDCLL NSQKQYRAMI EERDTSGGKS KGQGTGTILI VTLVDAETET 540
  541 SINATMLEEG LARLERSKRW DTRERKAALQ NLEQFQEKAK KERLQIWQYG DVESDEEEQA 600
  601 PAARRTGGRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	3bdlA
Description:	No description for 3bdlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits