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View Structure Prediction Details

Protein: gi|113536474, gi...
Organism: Oryza sativa Japonica Group
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113536474, gi....

Description E-value Query
Range
Subject
Range
gi|63021410, gi|... - gi|85372705|gb|ABC70158.1| putative protein serine/threonine kinase [Triticum aestivum], gi|63021410...
358.0 [0..50] [526..32]
gi|115458100, gi... - gi|115458100|ref|NP_001052650.1| Os04g0393900 [Oryza sativa (japonica cultivar-group)], gi|113564221...
355.0 [0..83] [526..72]
gi|116309379 - gi|116309379|emb|CAH66458.1| H0718E12.2 [Oryza sativa (indica cultivar-group)]
355.0 [0..92] [526..53]
gi|13897310, gi|... - gi|162463139|ref|NP_001105133.1| somatic embryogenesis receptor-like kinase2 [Zea mays], gi|13897310...
348.0 [0..3] [422..175]
PBS1_ARATH - Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
345.0 [0..38] [497..2]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCFSCFDSP AEEQLNPKVG GPYGGGSSSS AAAAAYGGGG GSSAGRHGER GGGYPDLHHH  60
   61 HQQQQLPMAA PRVEKLSAGA EKTRVKSNAI LREP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.208 d.58.10 Acylphosphatase-like

Predicted Domain #2
Region A:
Residues: [95-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPKDANGNV ISAQTFTFRE LATATRNFRP ECFLGEGGFG RVYKGRLEST GQVVAIKQLN  60
   61 RDGLQGNREF LVEVLMLSLL HHQNLVNLIG YCADGDQRLL VYEYMHFGSL EDHLHDLPPD 120
  121 KEALDWNTRM KIAAGAAKGL EYLHDKANPP VIYRDFKSSN ILLDESFHPK LSDFGLAKLG 180
  181 PVGDKSHVST RVMGTYGYCA PEYAMTGQLT VKSDVYSFGV VLLELITGRR AIDSTRPHGE 240
  241 QNLVSWARPL FNDRRKLPKM ADPRLEGRYP MRGLYQALAV ASMCIQSEAA SRPLIADVVT 300
  301 ALSYLASQSY DPNAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #3
Region A:
Residues: [410-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HASRKPGGDQ RSKVGENGRV VSRNDEASSS GHKSPNKDRE DSPKEPPGIL NKDFDRERMV  60
   61 AEAKMWGDRE RMVAEAKMWG DRERMVAEAK MWGENWRDKR RAIENGQGSL DSPTENG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle