YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115445589, gi...
Organism: Oryza sativa Japonica Group
Length: 349 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115445589, gi....

Description E-value Query
Range
Subject
Range
GDL62_ARATH - GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
384.0 [0..1] [345..2]
gi|34910674, gi|... - gi|34910674|ref|NP_916684.1| P0690B02.1 [Oryza sativa (japonica cultivar-group)], gi|18461216|dbj|BA...
302.0 [0..31] [345..1]

Back

Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDRDIFGI SGPTYLNPVN WNCEHNRRSV AACLVQAVYV LERDRQLGRQ SVEALGPPWW  60
   61 EFFHFELIRK LVDDADLSIF GAIFEFNPPS SKESSADNAP RFVIAFRGTI TEKETISRDI 120
  121 ALDLHLVQNG LHRTSRFTIA MQAVQNVASV FPGSNIWLAG HSLGAGMAIL TGRNMVKKGV 180
  181 LLESYLFNPP FVAAPIERIS DERVKHGFRI ARSVITAGLA IAMKGKGEGS SQRSVAEDSF 240
  241 HILSSW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.30103
Match: 1tiaA
Description: AN UNUSUAL BURIED POLAR CLUSTER IN A FAMILY OF FUNGAL LIPASES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [247-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPYLFVNPGD HICSEYIGYF QHRKNMEDLG AGFIEKLATQ NSIGDLFYKA LGWESEPLHL  60
   61 LPSADLIVNV SPSPDFKYAH GISQWWQPEL NLQCSKYRYS VGA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle