YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|34499838, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 154 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34499838, gi|....

Description E-value Query
Range
Subject
Range
gi|254671569 - gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis alpha1...
gi|11354139 - pir||E81218 RNA methyltransferase, TrmH family NMB0268 [imported] - Neisseria meningitidis (strain M...
gi|15676192, gi|... - gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58], gi|15676...
gi|225106955, gi... - gi|225106955|ref|ZP_03721091.1| hypothetical protein NEILACOT_00370 [Neisseria lactamica ATCC 23970]...
183.0 [0..1] [154..1]

Back

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTVVLFQPE IPPNTGNVIR LCANTGCELH LVKPMGFPLE DAKLRRAGLD YHEYARVVVH  60
   61 EDWDACLRTL QGRRIFAATT KGATRHDRIS YQPGDVFLFG PESRGLPQDV LAALPAQQRI 120
  121 RLPMRPESRS LNLSNAVAVT VFEAWRQLGF EGGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1j85A
Description: Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA methyltransferase activity 4.77771076540343 bayes_pls_golite062009
methyltransferase activity 4.0901595540349 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.01958090893547 bayes_pls_golite062009
rRNA methyltransferase activity 3.659149846946 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 2.59156540645412 bayes_pls_golite062009
tRNA methyltransferase activity 2.52700462137917 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 2.29844424181442 bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity 2.0947794364355 bayes_pls_golite062009
transferase activity 1.84002196534744 bayes_pls_golite062009
catalytic activity 1.16774040077235 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 0.47764353619615 bayes_pls_golite062009
N-methyltransferase activity 0.0655574594365502 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle