YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34499264, gi\|...
Organism:	Chromobacterium violaceum ATCC 12472
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34499264, gi|....

Description	E-value	Query Range	Subject Range
GSPI_KLEPN - Type II secretion system protein I OS=Klebsiella pneumoniae GN=pulI PE=3 SV=1 gi\|96554, gi\|227578 - gi\|96554\|pir\|\|S11919 pulI protein - Klebsiella oxytoca, gi\|227578\|prf\|\|1707264C pulI gene	115.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQQGFTLF EVLVALAIIA VALGALLRAT GLAADNAEGM ERRMQANWEA QNQIAMLQAL  60
   61 RQFPEPGQQA GESKEDGVEW RWEREISPTP NPNFRKVVVR ILAPGAGHYV LAEITGYLRQ 120
  121 QAGGGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2hi2A
Description:	No description for 2hi2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits