YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34105020, gi\|...
Organism:	Chromobacterium violaceum ATCC 12472
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34105020, gi|....

Description	E-value	Query Range	Subject Range
SPAC11D3.04c - SnoaL YAO4_SCHPO - Uncharacterized protein C11D3.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3...	206.0	[0..7]	[134..2]
gi\|56542644, gi\|... - gi\|56551070\|ref\|YP_161909.1\| hypothetical protein ZMO0174 [Zymomonas mobilis subsp. mobilis ZM4], gi...	133.0	[0..7]	[134..2]
gi\|58038793, gi\|... - gi\|58038793\|ref\|YP_190757.1\| hypothetical protein GOX0318 [Gluconobacter oxydans 621H], gi\|58001207\|...	124.0	[0..6]	[134..10]
gi\|89072144, gi\|... - gi\|89072144\|ref\|ZP_01158740.1\| hypothetical protein SKA34_08918 [Photobacterium sp. SKA34], gi\|89052...	72.0	[0..8]	[135..67]
gi\|52349759, gi\|... - gi\|52787257\|ref\|YP_093086.1\| hypothetical protein BLi03568 [Bacillus licheniformis ATCC 14580], gi\|5...	55.0	[0..9]	[132..5]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPHSPDN LAIVRGMFAE LIETGRVDDD SIARYMAPGY RQRVDGRELD LDDFKNHLRL  60
   61 QRASVAKMEV HFLAVAQDHD CVLTHHQVRV ANKDGSAARF QVLAHITLRD GRIVACDELT 120
  121 RQVEGSVGDR DLGSRH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	2geyA
Description:	No description for 2geyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits