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View Structure Prediction Details

Protein: gi|34103736, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 209 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34103736, gi|....

Description E-value Query
Range
Subject
Range
KPTA_CHRVO - Probable RNA 2'-phosphotransferase OS=Chromobacterium violaceum GN=kptA PE=3 SV=2
KPTA_CHRVO - Probable RNA 2'-phosphotransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM...
294.0 [0..15] [209..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGACPRFERA SARGMIARNP IKQDPAMRNT QDDHSRFLSL VLRHQPETIG LQLDDQGWAD  60
   61 IGELLARLAA KGRNLGRKQL EKIVLDNDKQ RFAISEDGLR IRANQGHSIK IDLGLAACEP 120
  121 PDRLYHGTAS RFLDAILAEG LRPGQRQHVH LSADGQTARK VGARHGKPVV LEIDARAMRQ 180
  181 AGLAFYRSDN GVWLIDGVPP VFIRQTEAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.221849
Match: 1wfxA
Description: Crystal Structure of APE0204 from Aeropyrum pernix
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 1.7229093219327 bayes_pls_golite062009
NAD+ ADP-ribosyltransferase activity 1.61571758931023 bayes_pls_golite062009
catalytic activity 1.25705748974699 bayes_pls_golite062009
transferase activity, transferring pentosyl groups 0.789416780073681 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.355594977942641 bayes_pls_golite062009
binding 0.212977268771834 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle