YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|34332797, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34332797, gi|....

Description E-value Query
Range
Subject
Range
gi|152961617, gi... - gi|77629375|ref|ZP_00791961.1| COG0307: Riboflavin synthase alpha chain [Yersinia pseudotuberculosis...
291.0 [0..1] [201..1]

Back

Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVQGVA EVVAIEEKQD FRTHIVRLPQ EMLPGLQLGA SVAHNGCCLT VTRVDGDLVH  60
   61 FDLMQETLRV TNLGGIQAGD GVNVERAARF GDDIGGHAMS GHVMGLAAVT EVIESPNNRT 120
  121 VWFELPAGLE KYVFAKGYIG IDGISLTVGA VEGRRFCVHL IPETLNRTNI AGRKPGDRIN 180
  181 IEIDPQTQAI VDTVERVLAQ RGQVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.522879
Match: 1i8dA
Description: Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin synthase activity 5.11500941509376 bayes_pls_golite062009
catalytic activity 2.05427820269334 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
binding 0.534066059984103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle