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View Structure Prediction Details

Protein: gi|34497787, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34497787, gi|....

Description E-value Query
Range
Subject
Range
gi|49180409, gi|... - gi|49186482|ref|YP_029735.1| LexA repressor [Bacillus anthracis str. Sterne], gi|49180409|gb|AAT5578...
195.0 [0..1] [197..64]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTDKPKQHG GKRSGAGRKS VFGGDKTVAV RVPEPLKPIL QQWLDDYRSW RTANSAQAFD  60
   61 FRTLGAQLSE LSLPLFAGSV PAGSPVPADD LKETDIDLNT HLVSRPGDTF MVKVKGDSMQ 120
  121 GAGIHDGDLL LVERSREPRS GKVVVAALNG ELTVKRLERG PAGVRLLPEN PAYQPIDVPE 180
  181 DSSFHIWGVV TSVIHKVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 1jhfA
Description: LexA repressor, N-terminal DNA-binding domain; LexA C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.131345342552043 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle