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View Structure Prediction Details

Protein: gi|34103449, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34103449, gi|....

Description E-value Query
Range
Subject
Range
gi|48696940, gi|... - gi|48696940|ref|YP_024703.1| gp30 [Burkholderia phage BcepMu], gi|44829503|gb|AAS47870.1| gp30 [Burk...
gi|197295369, gi... - gi|197295369|ref|YP_002153910.1| phage Mu F virion morphogenesis protein [Burkholderia cenocepacia J...
397.0 [0..1] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVDLAYCM KLPPEQAIRY LKAKGFAITW DWEELWQDAQ AQAFTVAKVT RLDILQDIRD  60
   61 AVEKALAEGK TVAWFKKELT PVLKAKGWWG KQEVLDEDTG EVREVQLGSP RRLETIYRTN 120
  121 LQTAYMAGRW QIQMENVADR PYWMYVAIRD SKTRPSHRAL HGRVFRYDDP FWQSYYTPNG 180
  181 WGCRCRTIAL SADDLEARG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 48.075721
Match: PF04233.5
Description: No description for PF04233.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQVESSAGRL GTALRTVSER TGEQREVATF RTIDPLTRRE VSISPDVGWS YNPGAAAWTP  60
   61 DLSRYTGDLA KLAGRELRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.495 N/A N/A a.6.1 Putative DNA-binding domain
View Download 0.424 N/A N/A d.58.24 CheY-binding domain of CheA
View Download 0.400 N/A N/A b.40.4 Nucleic acid-binding proteins
View Download 0.387 N/A N/A b.11.1 gamma-Crystallin-like
View Download 0.385 N/A N/A d.141.1 Ribosomal protein L6


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle