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View Structure Prediction Details

Protein: gi|34496373, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34496373, gi|....

Description E-value Query
Range
Subject
Range
gi|83577920, gi|... - gi|83595006|ref|YP_428758.1| tripartite ATP-independent periplasmic transporter DctQ [Rhodospirillum...
gi|48766632 - ref|ZP_00271182.1| COG3090: TRAP-type C4-dicarboxylate transport system, small permease component [R...
157.0 [0..2] [190..1]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKFLDHLEE WMIACLMGAA TLITFVAVLH RYGSGIPALQ PYLAHINLSW AQELTVYLFV  60
   61 WMAKFGAAYG VRTGIHVGVD VLINRLPDRT RARFIVFGLL AGALFTGAIA VMGGDFVWNI 120
  121 AHTDQTSPDL EAPMWLVYLA IPAGSTLMCF RFLQVAWNFV KTGDLPKHDH GHVEGIEGNE 180
  181 ALDNLHPHDM HHGGRP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.79588
Match: PF04290.3
Description: No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle