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View Structure Prediction Details

Protein: gi|215704694, gi...
Organism: Oryza sativa Japonica Group
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215704694, gi....

Description E-value Query
Range
Subject
Range
gi|115469068, gi... - gi|51535771|dbj|BAD37810.1| Cgi67 serine protease-like [Oryza sativa Japonica Group], gi|115469068|r...
gi|125556173 - gi|125556173|gb|EAZ01779.1| hypothetical protein OsI_23807 [Oryza sativa Indica Group]
287.0 [0..1] [389..1]
gi|9802758, gi|7... - gi|9802758|gb|AAF99827.1|AC027134_9 Hypothetical protein [Arabidopsis thaliana], gi|79343655|ref|NP_...
260.0 [0..1] [386..1]
gi|87240397 - gi|87240397|gb|ABD32255.1| Esterase/lipase/thioesterase [Medicago truncatula]
241.0 [0..8] [372..1]

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Predicted Domain #1
Region A:
Residues: [1-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVTSTVAA RFAFFPPSPP SYGAEAPPPP AAAGAGVGVE KDGGGGGVVV ELTDVPRRGN  60
   61 VEARRLRTKR GTEVVAMYVR QAGARLTLLY SHGNAADLGQ MFELFVELSA HLNVNLMGYD 120
  121 YSGYGQSSGK PSEHNTYADI EAVYRCLVET YGASEENIIL YGQSVGSGPT LDLASRLPHL 180
  181 RAVVLHSPIL SGLRVMYPVK HTYWFDIYKN IDKIPLVRCP VLVIHGTADE VVDCSHGRAL 240
  241 WELSKVKYEP LWVKGGNHCN LELYPEYIKH LKKFVGAIEK SPPLYDES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 1yr2A
Description: Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [289-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESSGPSDNT QTNPEGTEES RKSTDCREKT RPSIDHRQST DRRDKSRGST DRRDKNRKSV  60
   61 DQPRASVDQP DRPRKSVDRF GGVMKSVRYI DCFRVTTASG S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle