| Protein: | MSL1_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1413 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for MSL1_ORYSJ.
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MAPMLSIASR SPSPALIAPH ASARATGLRA PFAGNRIVGW GWGDQTKSGT DRNRASICVV 60
61 LFLRVRSGEP TQAPRDPPAA VGGGGCYVRL PAP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [94-202] |
1 11 21 31 41 51
| | | | | |
1 PRDRDAVLYH VCLFTLLLCF IPITALAESD IKNLFALRKA IAVGKGFLHN WFELETPPCN 60
61 WSGISCVGLT VVAIDLSSTP LYVDFPSQII AFQSLVRLNV SGCGFSGEL
|
| Detection Method: | |
| Confidence: | 48.30103 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [203-792] |
1 11 21 31 41 51
| | | | | |
1 PEAMVNLQHL QHLDLSDNQL GGPLPASLFD LKMLKVMVLD NNMFSGQLSP AIAHLQQLTV 60
61 LSISTNSFSG GLPPELGSLK NLEYLDIHTN AFSGSIPASF SNLSRLLYLD ANNNNLTGSI 120
121 FPGIRALVNL VKLDLSSNGL VGAIPKELCQ LKNLQSLILS DNELTGSIPE EIGNLKQLEV 180
181 LNLLKCNLMD TVPLSIGNLE ILEGLYISFN SFSGELPASV GELRNLRQLM AKSAGFTGSI 240
241 PKELGNCKKL TTLVLSGNNF TGTIPEELAD LVAVVLFDVE GNRLSGHIPD WIQNWSNVSS 300
301 ISLAQNMFDG PLPGLPLHLV SFSAESNRLS GSIPAKICQG TFLQILRLND NNLTGSIDET 360
361 FKGCKNLTEL SLLDNHLHGE IPEYLALLPL VSLDLSHNNF TGMIPDRLWE SSTILDISLS 420
421 DNQLTGMITE SIGKLLSLQS LSIDRNYLQG PLPRSIGALR NLTALSLSGN MLSEDIPIQL 480
481 FNCRNLVTLD LSCNNLTGHI PKAISHLTKL NTLVLSRNRL SGAIPSELCV AFSRESHSEL 540
541 EYVQHIGLID LSRNRLTGHI PRAINNCSIL VELHLQDNLL SGTIPVELAE
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [793-868] |
1 11 21 31 41 51
| | | | | |
1 LRNITTIDLS SNALVGPVLP WPVPLASLQG LLLSNNRLSG SIPSGIGNIL PQITMLDLSG 60
61 NALTGTLPLD LLCKES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [869-1012] |
1 11 21 31 41 51
| | | | | |
1 LNHLDVSDNN ISGQIPFSCH EDKESPIPLI FFNASSNHFS GSLDESISNF TKLTYLDLHN 60
61 NSLTGRLPSA IARVTSLYYL DLSSNDFSGT IPCGICGMFG LTFANFSGNR DGGTFTLADC 120
121 AAEEGGVCAA NRVDRKMPDH PFHV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1013-1091] |
1 11 21 31 41 51
| | | | | |
1 LEATICCIAT AIVIVLVVIL VVYLRRRRKM LRRRQFVLVP AGDNAMADHE TTLSNNLLGR 60
61 RRMKKREPPS INLATFEHA
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 3en9A |
| Description: | No description for 3en9A was found. |
|
Region A: Residues: [1092-1413] |
1 11 21 31 41 51
| | | | | |
1 PVRVTVDEIM RATGNFDGMH VVGDGGFGTV YRAELPGGRR VAVKRLHGVG RRFQGGEREF 60
61 RAEMETVGKV RHPNLVPLLG YCAAGDERFL VYEYMEHGSL EDRLRGGGGA ALGWPERLTI 120
121 CGGAARGLAF LHHGFVPHVI HRDVKSSNVL LGEGLQPRVS DFGLARIISA CETHVSTVLA 180
181 GTLGYIPPEY ALAMRCTAKG DVYSFGVVML ELLTGRPPTW SSAEVTAEGD DERGGGGSLV 240
241 GWVRWMAARG RGGEVFDACL PVSGAEREQM ARVLDVARDC TADEPWRRPT MAEVARRVGA 300
301 IEAMEYGPLV VAVSSGEPPA MP
|
| Detection Method: | |
| Confidence: | 57.0 |
| Match: | 2qkwB |
| Description: | No description for 2qkwB was found. |
