YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|41052897, gi|...
Organism: Oryza sativa Japonica Group
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41052897, gi|....

Description E-value Query
Range
Subject
Range
gi|50749993 - gi|50749993|ref|XP_421826.1| PREDICTED: similar to thioredoxin-like [Gallus gallus]
206.0 [0..19] [275..44]

Back

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCAASAFVD DDDDDDRRRR IIGVSASHIV SLTSSTYGIL DNILVSSAQS QSQSQSPTRI  60
   61 PPPPTPPPRP TTTTNPPCAA PPEKHLKKQG EAEVINSWEL MAGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.154902
Match: 2diyA
Description: No description for 2diyA was found.

Predicted Domain #2
Region A:
Residues: [105-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPATPQKPR RPTHHSPPPA PPAGVLLYTT TLRGVRATFE ACNAVRAALH SHGVAFRERD  60
   61 ISMDRGFREE LRHRISLDHH DRAPLVPRLF VRGNHVGGAA EVARLEEEGK LAALLEGLPR 120
  121 AR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1ykaA
Description: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [227-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGGGCCDGCG GMRFLPCFDC NGSRKLCFSL PTPVPAAAAA RSNKTRAVVV VRCGECNENG  60
   61 LVLCPICS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 2cttA
Description: Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle