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View Structure Prediction Details

Protein: gi|10442698
Organism: Oryza sativa
Length: 364 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10442698.

Description E-value Query
Range
Subject
Range
UPTG_MAIZE - Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2
635.0 [0..1] [364..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTVTVPSA SVPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPTKTIR  60
   61 VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV SKKKYVFTID DDCFVAKDPS 120
  121 GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAKT AVSHGLWLNI 180
  181 PDYDAPTQMV K

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.18
Match: 1omxA
Description: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [192-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRERNSRYVD AVMTVPKGTL FPMCGMNLAF DRDLIGPAMY FGLMGDGQPI GRYDDMWAGW  60
   61 CMKVICDHLS LGVKTGLPYI WHSKASNPFV NLKKEYKGIF WQEDIIPFFQ NATIPKECDT 120
  121 VQKCYLSLAE QVREKLGKID PYFVKLADAM VTWIEAWDEL NPSTAAVENG KAK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle