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View Structure Prediction Details

Protein: gi|115453925, gi...
Organism: Oryza sativa Japonica Group
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115453925, gi....

Description E-value Query
Range
Subject
Range
gi|12324641, gi|... - gi|30695366|ref|NP_564615.3| peroxisomal membrane protein-related [Arabidopsis thaliana], pir||H9656...
427.0 [0..1] [349..1]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMAAAVAS SPSPSPASTR LLRGHHPPPS CSAPSLLRLT RSSRRLRLRA AAAAEEADVL  60
   61 PGPGAEGEMA TGGRLEEQPE GPIGGSQVDI GGLAFQGDMG GGGFAGGSGG AGAGGGDGNK 120
  121 MLDRGINTAI VLGASTYALT KLLTVDHDYW HG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTIFEILRYM PEHNWSAYEE ALKTNPVLAK MMISGVVYSL GDWIAQCYEG KPIFEFDRAR  60
   61 MFRSGLVGFT LHGSLSHYYY HFCEALFPFK DWWVVPAKVV FDQTAWSAIW NSIYFVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [270-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGFLRLESPA TISSELKSTF WPMLTAGWKL WPFAHLVTYG LVPVEQRLLW VDCVELIWVT  60
   61 ILSTYSNEKS EARNSEDAST SNASNDNSI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.013228
Match: PF04117.3
Description: No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle