YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9657577, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9657577, gi|1....

Description	E-value	Query Range	Subject Range
gi\|116220998, gi... - gi\|75820411\|ref\|ZP_00750459.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	118.0	[0..1]	[75..17]
gi\|75822937, gi\|... - gi\|75822937\|ref\|ZP_00752484.1\| COG3036: Uncharacterized protein conserved in bacteria [Vibrio choler...	98.0	[0..13]	[75..2]
gi\|27358518, gi\|... - gi\|27366951\|ref\|NP_762478.1\| hypothetical protein VV2_0518 [Vibrio vulnificus CMCP6], gi\|27358518\|gb...	92.0	[0..1]	[68..1]
gi\|15602994, gi\|... - gi\|15602994\|ref\|NP_246066.1\| hypothetical protein PM1129 [Pasteurella multocida subsp. multocida str...	88.0	[0..19]	[74..15]
gi\|28808719, gi\|... - gi\|28900408\|ref\|NP_800063.1\| hypothetical protein VPA0553 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28808719 - gi\|28808719\|dbj\|BAC61896.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	87.0	[0..4]	[70..3]
gi\|91227012, gi\|... - gi\|91227012\|ref\|ZP_01261549.1\| hypothetical protein V12G01_06606 [Vibrio alginolyticus 12G01], gi\|91...	86.0	[0..4]	[70..3]
gi\|52426015, gi\|... - gi\|52426015\|ref\|YP_089152.1\| hypothetical protein MS1960 [Mannheimia succiniciproducens MBEL55E], gi...	82.0	[0..1]	[75..13]
SO4073 - conserved hypothetical protein gi\|24350442, gi\|... - gi\|24375560\|ref\|NP_719603.1\| hypothetical protein SO_4073 [Shewanella oneidensis MR-1], gi\|24350442\|...	81.0	[0..4]	[58..3]
gi\|54302489, gi\|... - gi\|54302489\|ref\|YP_132482.1\| hypothetical protein PBPRB0810 [Photobacterium profundum SS9], gi\|46915...	80.0	[0..5]	[66..33]
gi\|7413464, gi\|1... - gi\|7413464\|gb\|AAF62331.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15677245\|...	79.0	[0..16]	[72..3]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKPEVIPV STSSVGDTEC GRGVVKDNAL KAVVTSTLFR CRVEKAKKGK GSYSRKMKYK  60
   61 GKEPYANLTD FVVFA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.279	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.263	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.259	a.284.1	Description not found.
View	Download	0.255	b.122.1	PUA domain-like
View	Download	0.253	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.253	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.220	a.134.1	Fungal elicitin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits