YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9656685, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9656685, gi|1....

Description	E-value	Query Range	Subject Range
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	119.0	[0..4]	[109..17]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	114.0	[0..4]	[109..23]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	113.0	[0..4]	[109..23]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	112.0	[0..7]	[109..1]
gi\|161486614 - gi\|161486614\|ref\|NP_935275.2\| flagellar hook-basal body protein FliE [Vibrio vulnificus YJ016] gi\|27365279, gi\|... - gi\|27365279\|ref\|NP_760807.1\| flagellar hook-basal body protein FliE [Vibrio vulnificus CMCP6], gi\|27...	111.0	[0..7]	[109..1]
gi\|67154579 - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi... gi\|67154579, gi\|... - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi...	106.0	[0..8]	[109..37]
gi\|58582223, gi\|... - gi\|58582223\|ref\|YP_201239.1\| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842681...	103.0	[0..1]	[109..45]
gi\|45436239, gi\|... - gi\|45441379\|ref\|NP_992918.1\| flagellar basal body protein [Yersinia pestis biovar Microtus str. 9100...	102.0	[0..4]	[109..18]
gi\|77979915 - gi\|77979915\|ref\|ZP_00835331.1\| COG1677: Flagellar hook-basal body protein [Yersinia intermedia ATCC ...	102.0	[0..4]	[109..11]
gi\|218321841, gi... - gi\|218708822\|ref\|YP_002416443.1\| flagellar hook-basal body protein FliE [Vibrio splendidus LGP32], g... gi\|86146137, gi\|... - gi\|86146137\|ref\|ZP_01064463.1\| flagellar hook-basal body protein [Vibrio sp. MED222], gi\|85836084\|gb...	102.0	[0..7]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEVAMRLD GLNNEMQAMM FEAMNTQPAS TGQKVGADFG AMLTKAINNV NGLQKTSSDM  60
   61 QTRFDRGDEG ISLSDVMIAR NKSSVAFEAT IQVRNKLVEA YKELMNMPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.481486
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.992	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.992	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.992	N/A	N/A	a.47.1	STAT
View	Download	0.992	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.990	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.980	N/A	N/A	a.7.4	Smac/diablo
View	Download	0.980	N/A	N/A	a.7.4	Smac/diablo
View	Download	0.977	N/A	N/A	a.2.14	Description not found.
View	Download	0.976	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.971	N/A	N/A	a.2.6	Effector domain of the protein kinase pkn/prk1

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits