YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9656682, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9656682, gi|1....

Description	E-value	Query Range	Subject Range
gi\|27365282, gi\|... - gi\|27365282\|ref\|NP_760810.1\| flagellar assembly protein H [Vibrio vulnificus CMCP6], gi\|27361429\|gb\|... gi\|37199412, gi\|... - gi\|37680663\|ref\|NP_935272.1\| flagellar assembly protein H [Vibrio vulnificus YJ016], gi\|37199412\|dbj...	219.0	[0..5]	[270..1]
gi\|75827434 - gi\|75827434\|ref\|ZP_00756869.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [V... gi\|254849217, gi... - gi\|75830320\|ref\|ZP_00759600.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [V... gi\|75816888 - gi\|75816888\|ref\|ZP_00747346.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [V... gi\|229351944, gi... - gi\|229511979\|ref\|ZP_04401458.1\| flagellar assembly protein FliH [Vibrio cholerae B33], gi\|229351944\|... gi\|116219766, gi... - gi\|75819212\|ref\|ZP_00749304.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [V... gi\|229507784, gi... - gi\|229507784\|ref\|ZP_04397289.1\| flagellar assembly protein FliH [Vibrio cholerae BX 330286], gi\|2293... gi\|229607329, gi... - gi\|229607329\|ref\|YP_002877977.1\| flagellar assembly protein FliH [Vibrio cholerae MJ-1236], gi\|22936... gi\|229522084, gi... - gi\|229522084\|ref\|ZP_04411501.1\| flagellar assembly protein FliH [Vibrio cholerae TM 11079-80], gi\|22... gi\|229519115, gi... - gi\|229519115\|ref\|ZP_04408558.1\| flagellar assembly protein FliH [Vibrio cholerae RC9], gi\|229343804\|... tr\|C6YDH1\|C6YDH1... - Flagellar assembly protein H OS=Vibrio cholerae MO10 GN=VchoM_01363 PE=4 SV=1	217.0	[0..5]	[270..1]
gi\|91191632, gi\|... - gi\|91223546\|ref\|ZP_01258811.1\| flagellar assembly protein H [Vibrio alginolyticus 12G01], gi\|9119163...	217.0	[0..5]	[270..1]
gi\|4322016 - gi\|4322016\|gb\|AAD15919.1\| polar flagellar assembly protein FliH [Vibrio parahaemolyticus]	214.0	[0..5]	[270..1]
gi\|28807240 - gi\|28807240\|dbj\|BAC60510.1\| polar flagellar assembly protein FliH [Vibrio parahaemolyticus RIMD 2210... gi\|28807240, gi\|... - gi\|28899021\|ref\|NP_798626.1\| flagellar assembly protein H [Vibrio parahaemolyticus RIMD 2210633], gi...	213.0	[0..5]	[270..1]
gi\|194540471, gi... - gi\|75856752\|ref\|ZP_00764375.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [V...	210.0	[0..5]	[270..1]
gi\|84388113, gi\|... - gi\|84388113\|ref\|ZP_00991009.1\| flagellar assembly protein [Vibrio splendidus 12B01], gi\|84377180\|gb\|...	204.0	[0..5]	[270..1]
gi\|86146134, gi\|... - gi\|86146134\|ref\|ZP_01064460.1\| flagellar assembly protein [Vibrio sp. MED222], gi\|85836081\|gb\|EAQ542...	202.0	[0..5]	[270..1]
gi\|46912544, gi\|... - gi\|54308118\|ref\|YP_129138.1\| flagellar assembly protein H [Photobacterium profundum SS9], gi\|4691254...	177.0	[0..5]	[269..1]
gi\|90328238, gi\|... - gi\|90411025\|ref\|ZP_01219039.1\| flagellar assembly protein [Photobacterium profundum 3TCK], gi\|903282...	176.0	[0..5]	[267..1]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITMSGERK RGFIRPGTDD ATVTPQRWGL PDYGAESNKA AKQTAFNYDP GWIPNFDEPE  60
   61 QVVEHEFSEE EIALIRTAAQ QEGFEAGQAE GYQQGFEQGK AEGFQAGHQE GQTQGYQDGV 120
  121 AEGQALIQEQ VKTFMALANQ FAQPLDLLNA QVEKQLVDMV LALTKEVVHV EVQTNPQVIL 180
  181 DTVKASVEAL PIAGHAITLK LNPEDVEIIR QAYGEQEIET RNWTLLSEPA LSRGDVQIEA 240
  241 GESSVSYRME ERIRSVLKSF CGINRHHPGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits