YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11280369
Organism:	Vibrio cholerae
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11280369.

Description	E-value	Query Range	Subject Range
gi\|75822483, gi\|... - gi\|75822483\|ref\|ZP_00752100.1\| COG0327: Uncharacterized conserved protein [Vibrio cholerae RC385], g... tr\|D7HAE4\|D7HAE4... - Putative GTP cyclohydrolase 1 type 2 OS=Vibrio cholerae RC385 GN=VCRC385_01410 PE=3 SV=1	339.0	[0..1]	[256..1]
gi\|116219291, gi... - gi\|75818586\|ref\|ZP_00748729.1\| COG0327: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|...	337.0	[0..1]	[256..1]
GCH1L_VIBCH - GTP cyclohydrolase 1 type 2 homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba... YK93_VIBCH, Y209... - (Q9KQA7) Hypothetical UPF0135 protein VC2093, UPF0135 protein VC_2093 OS=Vibrio cholerae GN=VC_2093 ...	330.0	[0..5]	[256..1]
gi\|170717213, gi... - gi\|32030440\|ref\|ZP_00133290.1\| COG0327: Uncharacterized conserved protein [Haemophilus somnus 2336],...	326.0	[0..1]	[255..1]
gi\|84393484, gi\|... - gi\|84393484\|ref\|ZP_00992240.1\| hypothetical protein V12B01_21304 [Vibrio splendidus 12B01], gi\|84375...	326.0	[0..5]	[256..1]
gi\|28805827 - gi\|28805827\|dbj\|BAC59104.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153838602, gi... - gi\|153838602\|ref\|ZP_01991269.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28897615, gi\|... - gi\|28897615\|ref\|NP_797220.1\| hypothetical protein VP0841 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	324.0	[0..5]	[256..1]
gi\|59711424, gi\|... - gi\|59711424\|ref\|YP_204200.1\| metal-binding protein [Vibrio fischeri ES114], gi\|59479525\|gb\|AAW85312.... gi\|21842144 - gi\|21842144\|gb\|AAM77721.1\|AF474148_3 putative YbgI protein [Vibrio fischeri]	324.0	[0..5]	[256..1]
gi\|86147667, gi\|... - gi\|86147667\|ref\|ZP_01065976.1\| hypothetical protein MED222_20544 [Vibrio sp. MED222], gi\|85834578\|gb...	324.0	[0..5]	[256..1]
gi\|37197953, gi\|... - gi\|37679210\|ref\|NP_933819.1\| hypothetical protein VV1026 [Vibrio vulnificus YJ016], gi\|37197953\|dbj\|...	323.0	[0..1]	[256..24]
gi\|68056914, gi\|... - gi\|68248715\|ref\|YP_247827.1\| NIF3-like protein [Haemophilus influenzae 86-028NP], gi\|68056914\|gb\|AAX...	323.0	[0..5]	[255..29]

Back

Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKMNNLQL EALLNETLSP QLIKDYCPNG LQVEGKVEVK RIVTGVTASM ALIEAAIELK  60
   61 ADALLVHHGY FWKNEPEAIR GMKGRRIRTL IQNDLNLYAY HLPLDIHPQL GNNAQLAQRL 120
  121 GICVDGGLEG HPQSVAMFGH FLQPLTGEEL AHRIGQVLNR TPLHIAPDQA DKLIETVGWC 180
  181 TGGGQDYIEL AASRGLDAFI SGEISERTTY SAREQSIHYF SAGHHATERY GIKALGEWLA 240
  241 ENHGFDVTFI DIDNPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.522879
Match:	1nmoA
Description:	Structural genomics, protein ybgI, unknown function
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits