YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11277583
Organism:	Vibrio cholerae
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11277583.

Description	E-value	Query Range	Subject Range
gi\|37680646, gi\|... - gi\|37680646\|ref\|NP_935255.1\| chemotaxis protein CheZ [Vibrio vulnificus YJ016], gi\|37199394\|dbj\|BAC9...	288.0	[0..1]	[239..27]
gi\|229337653, gi... - gi\|229524072\|ref\|ZP_04413477.1\| chemotaxis response - phosphatase CheZ [Vibrio cholerae bv. albensis... gi\|194535419, gi... - gi\|75823331\|ref\|ZP_00752840.1\| COG3143: Chemotaxis protein [Vibrio cholerae RC385], gi\|254223274\|ref... tr\|D7HAB6\|D7HAB6... - Protein phosphatase CheZ OS=Vibrio cholerae RC385 GN=VCRC385_01388 PE=3 SV=1	283.0	[0..1]	[239..1]
CHEZ_PSEPK - Protein phosphatase CheZ OS=Pseudomonas putida (strain KT2440) GN=cheZ PE=3 SV=1	281.0	[0..5]	[239..17]
gi\|66046664, gi\|... - gi\|66046664\|ref\|YP_236505.1\| chemotaxis phosphatase, CheZ [Pseudomonas syringae pv. syringae B728a],...	280.0	[0..6]	[239..17]
CHEZ_VIBPA - Protein phosphatase CheZ OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=cheZ PE=... gi\|149749773, gi... - gi\|153837000\|ref\|ZP_01989667.1\| chemotaxis protein CheZ [Vibrio parahaemolyticus AQ3810], gi\|1497497... CHEZ_VIBPA - Protein phosphatase CheZ OS=Vibrio parahaemolyticus GN=cheZ PE=3 SV=1	280.0	[0..1]	[239..1]
gi\|27361446, gi\|... - gi\|27365299\|ref\|NP_760827.1\| chemotaxis protein [Vibrio vulnificus CMCP6], gi\|27361446\|gb\|AAO10354.1...	280.0	[0..1]	[239..1]
gi\|82714150, gi\|... - gi\|82738758\|ref\|ZP_00901583.1\| chemotaxis protein CheZ [Pseudomonas putida F1], gi\|82714150\|gb\|EAP49... tr\|I7C573\|I7C573... - Protein phosphatase CheZ OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_2423 PE=3 SV=1	280.0	[0..5]	[239..17]
gi\|194540482, gi... - gi\|75856735\|ref\|ZP_00764358.1\| COG3143: Chemotaxis protein [Vibrio sp. Ex25], gi\|254228449\|ref\|ZP_04...	278.0	[0..1]	[239..1]
gi\|71735321, gi\|... - gi\|71735321\|ref\|YP_275519.1\| chemotaxis protein CheZ [Pseudomonas syringae pv. phaseolicola 1448A], ...	278.0	[0..6]	[239..11]
gi\|77381795, gi\|... - gi\|77457792\|ref\|YP_347297.1\| chemotaxis phosphatase, CheZ [Pseudomonas fluorescens Pf0-1], gi\|773817...	278.0	[0..5]	[239..17]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLEQAKEL VQLLEQGRQD DANRLFTYVY ESANNPMFKE IGMLTRDLHE ALKNFQIDER  60
   61 FSEIATDEIP DARERLHYVI QKTEVAANKT MDAVDRCMPI ADKLHESLLL IRPEWNGLMN 120
  121 GRIELMHFKS LCHRIDDLLS QVEGDSSELR GELTEILMAQ DFQDLTGQII KRVINLVNEV 180
  181 EKRLVEILTV FGAAQKEQKA DKATVASIEP EGPILNPHER IDAVSSQDEV DDLLSSLGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	1kmiZ
Description:	Chemotaxis phosphatase CheZ
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits