YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11355952
Organism:	Vibrio cholerae
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11355952.

Description	E-value	Query Range	Subject Range
gi\|116189708, gi... - gi\|75830793\|ref\|ZP_00760065.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... gi\|126509232, gi... - gi\|153820222\|ref\|ZP_01972889.1\| starvation-inducible outer membrane lipoprotein [Vibrio cholerae NCT...	296.0	[0..18]	[202..1]
gi\|75814486 - gi\|75814486\|ref\|ZP_00745068.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol...	294.0	[0..18]	[202..1]
gi\|75827299 - gi\|75827299\|ref\|ZP_00756734.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... gi\|75817707 - gi\|75817707\|ref\|ZP_00748018.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... tr\|A0A085TD48\|A0... - Outer membrane lipo, Slp family protein OS=Vibrio cholerae GN=DN30_811 PE=4 SV=1	293.0	[0..18]	[202..1]
gi\|116218596 - gi\|116218596\|ref\|ZP_01484229.1\| hypothetical protein VchoV5_02003199 [Vibrio cholerae V51]	289.0	[0..20]	[202..1]
gi\|37679235, gi\|... - gi\|37679235\|ref\|NP_933844.1\| starvation-inducible outer membrane lipoprotein [Vibrio vulnificus YJ01...	266.0	[0..18]	[202..1]
gi\|27359737, gi\|... - gi\|27363621\|ref\|NP_759149.1\| starvation-inducible outer membrane lipoprotein [Vibrio vulnificus CMCP...	266.0	[0..18]	[202..1]
gi\|28897642, gi\|... - gi\|28897642\|ref\|NP_797247.1\| putative outer membrane lipoprotein Slp [Vibrio parahaemolyticus RIMD 2... gi\|28805855 - gi\|28805855\|dbj\|BAC59131.1\| putative outer membrane lipoprotein Slp [Vibrio parahaemolyticus RIMD 22...	262.0	[0..18]	[202..1]
gi\|75854037, gi\|... - gi\|75854037\|ref\|ZP_00761760.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio sp. ...	259.0	[0..18]	[202..1]
gi\|91187528, gi\|... - gi\|91228920\|ref\|ZP_01262819.1\| putative outer membrane lipoprotein Slp [Vibrio alginolyticus 12G01],...	257.0	[0..18]	[202..1]
gi\|217328611, gi... - gi\|217328611\|ref\|ZP_03444692.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. TW14588], ... gi\|209158701, gi... - gi\|209397301\|ref\|YP_002270883.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4115], ... gi\|208724815, gi... - gi\|208810299\|ref\|ZP_03252175.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4206], g... gi\|195937494 - gi\|195937494\|ref\|ZP_03082876.1\| Slp family outer membrane lipoprotein [Escherichia coli O157:H7 str.... gi\|208740643, gi... - gi\|208820520\|ref\|ZP_03260840.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4042], g... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai], ... gi\|208816570, gi... - gi\|208816570\|ref\|ZP_03257690.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4045], g... gi\|168782238, gi... - gi\|189000260\|gb\|EDU69246.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187769462, gi... - gi\|187769462\|gb\|EDU33306.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189376753, gi... - gi\|189376753\|gb\|EDU95169.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|168788219, gi... - gi\|189371973\|gb\|EDU90389.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189355004, gi... - gi\|189355004\|gb\|EDU73423.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|188016282, gi... - gi\|188016282\|gb\|EDU54404.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|209768020, gi... - pir\|\|G85791 probable outer membrane protein Z2849 [imported] - Escherichia coli (strain O157:H7, sub... gi\|168770779, gi... - gi\|189360405\|gb\|EDU78824.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|189365726, gi... - gi\|189365726\|gb\|EDU84142.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|15802219, gi\|... - gi\|15802219\|ref\|NP_288242.1\| putative outer membrane protein [Escherichia coli O157:H7 EDL933], gi\|1... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7], gi\|13361982... gi\|254592828, gi... - gi\|254793428\|ref\|YP_003078265.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	242.0	[0..17]	[183..2]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSYLGSIST SKTEVNSMKM HVLKLLIPTM ALLLSACASL PPELGNPDDK SVVTQYSAWL  60
   61 ERDPATQSPV RMGGVVANIS NQKDRTRVEL VNLPIDSAGR PNIHQEPQGR FVAYVPGFLD 120
  121 PITYGEGRLL TLYGTTAPSE QGKVGDYEHT YPVMNAQGYH LWRVEERVEV DDIGPYMFPC 180
  181 RGFYCWPRTM PERDGKIIQE VK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.823909
Match:	PF03843.4
Description:	No description for PF03843.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits