YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11282842
Organism:	Vibrio cholerae
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11282842.

Description	E-value	Query Range	Subject Range
gi\|59711631, gi\|... - gi\|59711631\|ref\|YP_204407.1\| hydrolase [Vibrio fischeri ES114], gi\|59479732\|gb\|AAW85519.1\| predicted...	144.0	[0..14]	[138..17]
gi\|47168418, gi\|... - gi\|60594418\|pdb\|1YLI\|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity Acyl-Coen...	142.0	[0..13]	[145..10]
gi\|116190020, gi... - gi\|75831037\|ref\|ZP_00760305.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae MO10], gi\|116190020\|ref\|... gi\|75820140, gi\|... - gi\|75820140\|ref\|ZP_00750195.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae V51], gi\|116221264\|ref\|Z... gi\|75827054 - gi\|75827054\|ref\|ZP_00756489.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae O395] gi\|75815642 - gi\|75815642\|ref\|ZP_00746140.1\| COG1607: Acyl-CoA hydrolase [Vibrio cholerae V52] tr\|A0A085SP41\|A0... - Uncharacterized protein OS=Vibrio cholerae GN=DA89_2641 PE=4 SV=1	142.0	[0..8]	[136..1]
gi\|148716688, gi... - gi\|148826528\|ref\|YP_001291281.1\| Trp operon repressor [Haemophilus influenzae PittEE], gi\|148716688\|... gi\|46129192 - gi\|46129192\|ref\|ZP_00202029.1\| COG1607: Acyl-CoA hydrolase [Haemophilus influenzae R2846] gi\|229845878, gi... - gi\|229845878\|ref\|ZP_04465990.1\| Trp operon repressor [Haemophilus influenzae 7P49H1], gi\|229810882\|g...	142.0	[0..13]	[145..11]
gi\|145632186, gi... - gi\|145632186\|ref\|ZP_01787921.1\| hypothetical protein CGSHi3655_07024 [Haemophilus influenzae 3655], ... Y827_HAEIN - Uncharacterized acyl-CoA thioester hydrolase HI_0827 OS=Haemophilus influenzae (strain ATCC 51907 / ... Y827_HAEIN, YCIA... - (P44886) Putative acyl-CoA thioester hydrolase HI0827 (EC 3.1.2.-), Uncharacterized acyl-CoA thioest... gi\|229844695, gi... - gi\|229844695\|ref\|ZP_04464834.1\| hypothetical protein CGSHi6P18H1_03774 [Haemophilus influenzae 6P18H... gi\|145274446, gi... - gi\|145640932\|ref\|ZP_01796514.1\| hypothetical protein CGSHiR3021_07682 [Haemophilus influenzae R3021]... gi\|145640932 - gi\|145640932\|ref\|ZP_01796514.1\| hypothetical protein CGSHiR3021_07682 [Haemophilus influenzae R3021] gi\|145634761, gi... - gi\|145634761\|ref\|ZP_01790469.1\| Trp operon repressor [Haemophilus influenzae PittAA], gi\|145267927\|g...	142.0	[0..13]	[145..11]
gi\|144983966 - gi\|144983966\|gb\|EDJ91408.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae R3021] gi\|48867705, gi\|... - gi\|68249422\|ref\|YP_248534.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae 86-028NP]... gi\|145638371, gi... - gi\|145638371\|ref\|ZP_01793981.1\| Trp operon repressor [Haemophilus influenzae PittII], gi\|145272700\|g... gi\|46133151 - gi\|46133151\|ref\|ZP_00203092.1\| COG1607: Acyl-CoA hydrolase [Haemophilus influenzae R2866] gi\|145270139, gi... - gi\|145636613\|ref\|ZP_01792280.1\| Trp operon repressor [Haemophilus influenzae PittHH], gi\|145270139\|g... gi\|145630576 - gi\|145630576\|ref\|ZP_01786356.1\| putative acyl-CoA thioester hydrolase [Haemophilus influenzae 22.4-2...	141.0	[0..13]	[145..11]
gi\|75853851, gi\|... - gi\|75853851\|ref\|ZP_00761602.1\| COG1607: Acyl-CoA hydrolase [Vibrio sp. Ex25], gi\|116183380\|ref\|ZP_01...	139.0	[0..8]	[136..1]
gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21... gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21...	137.0	[0..8]	[144..1]
gi\|91188905, gi\|... - gi\|91226942\|ref\|ZP_01261539.1\| putative acyl-CoA hydrolase [Vibrio alginolyticus 12G01], gi\|91188905...	137.0	[0..8]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAVDPQMNQ TVNSPKGQLL LRTLAMPADT NANGDIFGGW IMSQLDLAGG ILAKEISCGR  60
   61 IVTVSVSSIT FKKPVKVGDV VCCYGECTKI GRTSMSINLE VWVKPVKEEG VGERFQVCEA 120
  121 TFNYVAIDAN GRPRAISLSN GSQKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1yliA
Description:	Structure of HI0827, a thioesterase acting on short-chain acyl-CoA compounds
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.74605540351792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: