YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11355795
Organism:	Vibrio cholerae
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11355795.

Description	E-value	Query Range	Subject Range
tr\|D7H9F5\|D7H9F5... - Phage shock protein B OS=Vibrio cholerae RC385 GN=VCRC385_02144 PE=4 SV=1 gi\|116217678, gi... - gi\|75824408\|ref\|ZP_00753863.1\| hypothetical protein VchoR_01000506 [Vibrio cholerae RC385], gi\|11621...	128.0	[0..1]	[77..1]
gi\|37198321, gi\|... - gi\|37679577\|ref\|NP_934186.1\| phage shock protein B [Vibrio vulnificus YJ016], gi\|37198321\|dbj\|BAC941... gi\|27362357, gi\|... - gi\|27366157\|ref\|NP_761685.1\| phage shock protein B [Vibrio vulnificus CMCP6], gi\|27362357\|gb\|AAO1121...	124.0	[0..1]	[77..1]
gi\|91225995, gi\|... - gi\|91225995\|ref\|ZP_01260922.1\| phage shock protein B [Vibrio alginolyticus 12G01], gi\|91189436\|gb\|EA...	123.0	[0..1]	[77..1]
gi\|28806162, gi\|... - gi\|28897948\|ref\|NP_797553.1\| phage shock protein B [Vibrio parahaemolyticus RIMD 2210633], gi\|288061... gi\|28806162 - gi\|28806162\|dbj\|BAC59437.1\| phage shock protein B [Vibrio parahaemolyticus RIMD 2210633] gi\|153837504, gi... - gi\|153837504\|ref\|ZP_01990171.1\| phage shock protein B [Vibrio parahaemolyticus AQ3810], gi\|149749198...	123.0	[0..1]	[77..1]
gi\|75855695, gi\|... - gi\|75855695\|ref\|ZP_00763339.1\| hypothetical protein VEx2w_01002214 [Vibrio sp. Ex25], gi\|116184962\|r...	122.0	[0..1]	[77..1]
gi\|10719745 - gi\|10719745\|gb\|AAG22114.1\| phage shock protein B [Yersinia enterocolitica] gi\|123442381, gi... - gi\|123442381\|ref\|YP_001006360.1\| phage shock protein B [Yersinia enterocolitica subsp. enterocolitic...	118.0	[0..1]	[73..1]
gi\|86147061, gi\|... - gi\|86147061\|ref\|ZP_01065378.1\| phage shock protein B [Vibrio sp. MED222], gi\|85835126\|gb\|EAQ53267.1\|...	118.0	[0..1]	[77..1]
gi\|77979532 - gi\|77979532\|ref\|ZP_00834950.1\| hypothetical protein YintA_01000713 [Yersinia intermedia ATCC 29909]	117.0	[0..1]	[73..1]
gi\|77958056 - gi\|77958056\|ref\|ZP_00822097.1\| hypothetical protein YberA_01001748 [Yersinia bercovieri ATCC 43970]	117.0	[0..1]	[73..1]
gi\|77961689 - gi\|77961689\|ref\|ZP_00825521.1\| hypothetical protein YmolA_01002033 [Yersinia mollaretii ATCC 43969]	117.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFFIAVPL IVFCIFVAPL WLILHYRSKR KTGDGLSDEE LQLLRTLSDK ANRLQDRVET  60
   61 LERILDDETP NWRNRYE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.677781
Match:	PF06667.3
Description:	No description for PF06667.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits