YRC Public Data Repository - Protein Structure Prediction

Protein:	KITH_VIBCH
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KITH_VIBCH.

Description	E-value	Query Range	Subject Range
gi\|149746694, gi... - gi\|153839786\|ref\|ZP_01992453.1\| thymidine kinase [Vibrio parahaemolyticus AQ3810], gi\|149746694\|gb\|E... KITH_VIBPA - Thymidine kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tdk PE=3 SV=1 KITH_VIBPA - Thymidine kinase OS=Vibrio parahaemolyticus GN=tdk PE=3 SV=1	279.0	[0..1]	[192..1]
gi\|91189459, gi\|... - gi\|91226018\|ref\|ZP_01260945.1\| thymidine kinase [Vibrio alginolyticus 12G01], gi\|91189459\|gb\|EAS7573...	278.0	[0..1]	[192..1]
KITH_VIBF1 - Thymidine kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tdk PE=3 SV=1 gi\|197334353, gi... - gi\|197334353\|ref\|YP_002156416.1\| thymidine kinase [Vibrio fischeri MJ11], gi\|197315843\|gb\|ACH65290.1...	277.0	[0..1]	[192..1]
KITH_VIBVU - Thymidine kinase OS=Vibrio vulnificus (strain CMCP6) GN=tdk PE=3 SV=2 KITH_VIBVU - Thymidine kinase OS=Vibrio vulnificus GN=tdk PE=3 SV=2	276.0	[0..1]	[192..1]
gi\|238718765, gi... - gi\|77960742\|ref\|ZP_00824600.1\| COG1435: Thymidine kinase [Yersinia mollaretii ATCC 43969], gi\|238797...	276.0	[0..1]	[190..1]
KITH_VIBVY - Thymidine kinase OS=Vibrio vulnificus (strain YJ016) GN=tdk PE=3 SV=1	276.0	[0..1]	[192..1]
gi\|77377647 - gi\|77377647\|gb\|ABA70559.1\| thymidine kinase [Yersinia enterocolitica]	276.0	[0..1]	[190..1]
gi\|39939251 - gi\|39939251\|gb\|AAR32708.1\| thymidine kinase [Xenorhabdus nematophila]	274.0	[0..1]	[188..1]
gi\|113460556, gi... - gi\|23466490\|ref\|ZP_00122078.1\| COG1435: Thymidine kinase [Haemophilus somnus 129PT], gi\|113460556\|re...	273.0	[0..1]	[190..1]
gi\|1246361 - gi\|1246361\|gb\|AAA93511.1\| thymidine:thymidylate kinase:zeocin resistance fusion protein [Cloning vec...	273.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQMYFYYSA MNAGKSTTLL QSAFNYQERG MNPLIFTAAI DDRFGVGKVS SRIGLEAEAH  60
   61 LFHADTDLLH VIATLHEAEP RHCILMDECQ FLSKEQVYQL TEVVDKLDIP VLCYGLRTDF 120
  121 LGELFEGSKY LLSWADKLIE LKTICHCGRK ANMVIRTDEH GNAISEGDQV AIGGNDKYVS 180
  181 VCRQHYKEAL GR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.09691
Match:	2ja1A
Description:	No description for 2ja1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits