YRC Public Data Repository - Protein Structure Prediction

Protein:	ETCE_VIBCH
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ETCE_VIBCH.

Description	E-value	Query Range	Subject Range
gi\|37679371, gi\|... - gi\|37679371\|ref\|NP_933980.1\| SoxR-reducing system protein RsxE [Vibrio vulnificus YJ016], gi\|3719811...	284.0	[0..1]	[229..5]
RNFE_VIBVU - Electron transport complex protein rnfE OS=Vibrio vulnificus GN=rnfE PE=3 SV=1 ETCE_VIBVY - Electron transport complex subunit E OS=Vibrio vulnificus (strain YJ016) GN=VV1187 PE=3 SV=2 ETCE_VIBVU - Electron transport complex subunit E OS=Vibrio vulnificus (strain CMCP6) GN=VV1_3098 PE=3 SV=1	283.0	[0..1]	[229..1]
gi\|197750933, gi... - gi\|254291765\|ref\|ZP_04962551.1\| RnfE-related protein [Vibrio cholerae AM-19226], gi\|197750933\|ref\|YP... gi\|148874988, gi... - gi\|153829528\|ref\|ZP_01982195.1\| RnfE-related protein [Vibrio cholerae 623-39], gi\|148874988\|gb\|EDL73... gi\|116214701, gi... - gi\|75821322\|ref\|ZP_00751262.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr... gi\|153824932, gi... - gi\|153824932\|ref\|ZP_01977599.1\| RnfE-related protein [Vibrio cholerae MZO-2], gi\|149741444\|gb\|EDM554... ETCE_VIBC3 - Electron transport complex subunit E OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O... gi\|121729987, gi... - gi\|75814532\|ref\|ZP_00745108.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr... tr\|D7H7L4\|D7H7L4... - Electron transport complex subunit E OS=Vibrio cholerae GN=DN30_1928 PE=3 SV=1, Electron transport c...	277.0	[0..1]	[230..1]
gi\|54309726, gi\|... - gi\|54309726\|ref\|YP_130746.1\| electron transport complex RsxE subunit [Photobacterium profundum SS9],...	277.0	[0..1]	[229..1]
RNFE_VIBPA - Electron transport complex protein rnfE OS=Vibrio parahaemolyticus GN=rnfE PE=3 SV=1 ETCE_VIBPA - Electron transport complex subunit E OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)...	275.0	[0..1]	[229..1]
gi\|194538319, gi... - gi\|75853688\|ref\|ZP_00761471.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr...	274.0	[0..1]	[229..1]
gi\|84376008, gi\|... - gi\|84393399\|ref\|ZP_00992158.1\| NADH-ubiquinone oxidoreductase [Vibrio splendidus 12B01], gi\|84376008...	273.0	[0..1]	[229..1]
gi\|91228905, gi\|... - gi\|91228905\|ref\|ZP_01262805.1\| NADH-ubiquinone oxidoreductase [Vibrio alginolyticus 12G01], gi\|91187...	273.0	[0..1]	[229..1]
gi\|86147964, gi\|... - gi\|86147964\|ref\|ZP_01066268.1\| NADH-ubiquinone oxidoreductase [Vibrio sp. MED222], gi\|85834289\|gb\|EA...	271.0	[0..1]	[229..1]
gi\|90579153, gi\|... - gi\|90579153\|ref\|ZP_01234963.1\| NADH-ubiquinone oxidoreductase [Vibrio angustum S14], gi\|90439986\|gb\|...	270.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENRTLMLN GMWNNNPALV QLLGLCPLLA VSSTVTNALG LGIATLLVLV GSNVTVSLVR  60
   61 DYVPKEVRIP VFVMIIASLV TCVQLLMNAY AYGLYLSLGI FIPLIVTNCI IIGRAEAFAS 120
  121 KNDVLPAALD GFWMGLGMTS VLVVLGSLRE IIGNGTLFDG ADLLLGEWAK VLRIEVFHFD 180
  181 SAFLLALLPP GAFIGVGFLI AAKSVIDKQT AARQPKQQKQ AIERARVTNV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.920819
Match:	PF02508.5
Description:	No description for PF02508.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits