YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11354553
Organism:	Vibrio cholerae
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11354553.

Description	E-value	Query Range	Subject Range
gi\|32189733, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|15... gi\|21629327, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|21...	219.0	[0..2]	[182..143]
gi\|28564914 - gi\|28564914\|gb\|AAO32541.1\| FUN34 [Saccharomyces castellii]	208.0	[0..2]	[178..96]
gi\|95928934, gi\|... - gi\|95928934\|ref\|ZP_01311679.1\| GPR1/FUN34/yaaH [Desulfuromonas acetoxidans DSM 684], gi\|95134835\|gb\|...	208.0	[0..1]	[189..85]
gi\|27363884, gi\|... - gi\|27363884\|ref\|NP_759412.1\| hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6], gi\|27360001\|gb... gi\|37197704, gi\|... - gi\|37678962\|ref\|NP_933571.1\| hypothetical protein VV0778 [Vibrio vulnificus YJ016], gi\|37197704\|dbj\|...	205.0	[0..1]	[197..1]
gi\|14970589 - gi\|14970589\|emb\|CAA52243.2\| glyxoxylate pathway regulator [Yarrowia lipolytica]	205.0	[0..2]	[189..74]
gi\|86145607, gi\|... - gi\|86145607\|ref\|ZP_01063937.1\| Predicted membrane protein [Vibrio sp. MED222], gi\|85836578\|gb\|EAQ547...	205.0	[0..1]	[197..1]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	205.0	[0..2]	[189..74]
gi\|69950296, gi\|... - gi\|69950296\|ref\|ZP_00638195.1\| GPR1/FUN34/yaaH [Shewanella frigidimarina NCIMB 400], gi\|69165977\|gb\|...	205.0	[0..1]	[186..1]
gi\|207341596 - gi\|207341596\|gb\|EDZ69605.1\| YNR002Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATO2 - Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell... gi\|190408996 - gi\|190408996\|gb\|EDV12261.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO2_YEAST - Ammonia transport outward protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO2... gi\|151944531 - gi\|151944531\|gb\|EDN62809.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789]	204.0	[0..3]	[180..84]
gi\|84387652, gi\|... - gi\|84387652\|ref\|ZP_00990669.1\| Predicted membrane protein [Vibrio splendidus 12B01], gi\|84377497\|gb\|...	202.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLANPAP LGLMGFGMTT ILLNIHNAGF FPIDSMILAM GIFYGGLSQV IVGIMCFKRG  60
   61 DTFGTTAFTS YGLFWLTLVG LIVMPHMGLP ASPAPFMGWY LALWGIFTGF MFIGSLCYPT 120
  121 AKQVVFGSLT ILFALLAARD FTGSELIGTI AGFEGIFCGA SAIYFAMAQV LNNEYGRVVL 180
  181 PIGEKRVQPV KAQELAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.0
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits