YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_VIBCH
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_VIBCH.

Description	E-value	Query Range	Subject Range
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	320.0	[0..1]	[271..1]
LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus GN=lgt PE=3 SV=2 LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain CMCP6) GN=lgt PE=3 SV=2	319.0	[0..1]	[271..1]
LGT_VIBVY - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain YJ016) GN=lgt PE=3 SV=1	318.0	[0..1]	[271..1]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	316.0	[0..1]	[266..1]
gi\|84375415, gi\|... - gi\|84393971\|ref\|ZP_00992711.1\| prolipoprotein diacylglyceryl transferase [Vibrio splendidus 12B01], ... gi\|86147415, gi\|... - gi\|86147415\|ref\|ZP_01065728.1\| prolipoprotein diacylglyceryl transferase [Vibrio sp. MED222], gi\|858...	315.0	[0..1]	[266..1]
gi\|254226522, gi... - gi\|75818000\|ref\|ZP_00748236.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5...	314.0	[0..1]	[271..1]
LGT_VIBF1 - Prolipoprotein diacylglyceryl transferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=lgt PE=...	311.0	[0..1]	[261..1]
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	310.0	[0..6]	[268..159]
gi\|90326493, gi\|... - gi\|90412456\|ref\|ZP_01220459.1\| prolipoprotein diacylglyceryl transferase [Photobacterium profundum 3...	307.0	[0..1]	[264..1]
LGT_PHOPR - Prolipoprotein diacylglyceryl transferase OS=Photobacterium profundum (strain SS9) GN=lgt PE=3 SV=1 LGT_PHOPR - Prolipoprotein diacylglyceryl transferase OS=Photobacterium profundum GN=lgt PE=3 SV=1	306.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQGYLQFPN IDPVLFSIGP LAVRWYGLMY LVGFLFAMWL ANRRADRAGS GWTREQVSDL  60
   61 LFAGFLGVVI GGRVGYVIFY NFDLFLADPL YLFKVWTGGM SFHGGLLGVI TAMFWYARKN 120
  121 QRTFFGVADF VAPLVPFGLG MGRIGNFMNS ELWGRVTDVP WAFVFPNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [169-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLPRHPSQL YEFALEGVVL FFILNWFIGK PRPLGSVSGL FLAGYGTFRF LVEYVREPDA  60
   61 QLGLFGGFIS MGQILSLPMV IIGILMMVWS YKRGLYQDRV AAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits