YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9654884, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9654884, gi|1....

Description	E-value	Query Range	Subject Range
gi\|27364894, gi\|... - gi\|27364894\|ref\|NP_760422.1\| integral membrane protein [Vibrio vulnificus CMCP6], gi\|27361039\|gb\|AAO...	168.0	[0..1]	[185..1]
YPI3_VIBAL - Uncharacterized protein in proC 3'region OS=Vibrio alginolyticus PE=3 SV=1	167.0	[0..1]	[185..1]
gi\|91187760, gi\|... - gi\|91228689\|ref\|ZP_01262603.1\| FkuB [Vibrio alginolyticus 12G01], gi\|91187760\|gb\|EAS74078.1\| FkuB [V...	167.0	[0..1]	[185..1]
gi\|75825860, gi\|... - gi\|75825860\|ref\|ZP_00755295.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae O395], ... gi\|75815263, gi\|... - gi\|75815263\|ref\|ZP_00745781.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae V52], g... gi\|227080669, gi... - gi\|227080669\|ref\|YP_002809220.1\| hypothetical protein VCM66_0444 [Vibrio cholerae M66-2], gi\|2270085... gi\|116219736, gi... - gi\|75819185\|ref\|ZP_00749278.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae V51], g... gi\|229350414, gi... - gi\|229512521\|ref\|ZP_04401992.1\| hypothetical protein VCB_000161 [Vibrio cholerae TMA 21], gi\|2293504... gi\|229355842, gi... - gi\|229507097\|ref\|ZP_04396603.1\| hypothetical protein VCF_002319 [Vibrio cholerae BX 330286], gi\|2293... gi\|229519845, gi... - gi\|229519845\|ref\|ZP_04409279.1\| hypothetical protein VIF_000359 [Vibrio cholerae TM 11079-80], gi\|22... gi\|121547456, gi... - gi\|121590725\|ref\|ZP_01678057.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215474... gi\|153224219, gi... - gi\|153224219\|ref\|ZP_01954302.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241177... gi\|124114358, gi... - gi\|153216269\|ref\|ZP_01950362.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114358\|... gi\|153819169, gi... - gi\|153819169\|ref\|ZP_01971836.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|124121868, gi... - gi\|153802605\|ref\|ZP_01957191.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121868... tr\|A0A085QX74\|A0... - YGGT family protein OS=Vibrio cholerae GN=DA89_1909 PE=4 SV=1, Uncharacterized protein OS=Vibrio cho... gi\|254291170, gi... - gi\|254291170\|ref\|ZP_04961966.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197751... gi\|149739667, gi... - gi\|153826575\|ref\|ZP_01979242.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739667...	167.0	[0..1]	[185..1]
gi\|37199810, gi\|... - gi\|37681060\|ref\|NP_935669.1\| integral membrane protein [Vibrio vulnificus YJ016], gi\|37199810\|dbj\|BA...	166.0	[0..1]	[185..1]
gi\|116216666, gi... - gi\|75823377\|ref\|ZP_00752883.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae RC385],... tr\|D7HDG2\|D7HDG2... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03259 PE=4 SV=1	166.0	[0..1]	[185..1]
gi\|28807628, gi\|... - gi\|28899392\|ref\|NP_798997.1\| FkuB [Vibrio parahaemolyticus RIMD 2210633], gi\|28807628\|dbj\|BAC60881.1... gi\|28807628 - gi\|28807628\|dbj\|BAC60881.1\| FkuB [Vibrio parahaemolyticus RIMD 2210633]	166.0	[0..1]	[185..1]
gi\|86146415, gi\|... - gi\|86146415\|ref\|ZP_01064739.1\| predicted integral membrane protein [Vibrio sp. MED222], gi\|85835894\|... gi\|84394063, gi\|... - gi\|84394063\|ref\|ZP_00992799.1\| predicted integral membrane protein [Vibrio splendidus 12B01], gi\|843...	164.0	[0..1]	[185..1]
gi\|116184471, gi... - gi\|75855121\|ref\|ZP_00762782.1\| COG0762: Predicted integral membrane protein [Vibrio sp. Ex25], gi\|11...	163.0	[0..4]	[185..1]
gi\|59479136, gi\|... - gi\|59711035\|ref\|YP_203811.1\| inner membrane protein [Vibrio fischeri ES114], gi\|59479136\|gb\|AAW84923...	161.0	[0..1]	[185..1]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLSFLINT LFDLYIMVVI LRIWLQAARA DFYNPFSQFI VKATQPVVGP LRRVIPSIGS  60
   61 IDLATIVFAY VLCVLKFMAL VLIASSG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.744727
Match:	PF02325.8
Description:	No description for PF02325.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSFSADFLF LGLLSLIKAA GGLLFWVLLI RAILSWVSQG RSPIEYVFHQ LTEPMLAPIR  60
   61 RIIPVMGGFD LSVLVLFIVL QFANFLMGDV IGPIWYQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.69897
Match:	PF02325.8
Description:	No description for PF02325.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits