YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11278573
Organism:	Vibrio cholerae
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11278573.

Description	E-value	Query Range	Subject Range
gi\|37199911, gi\|... - gi\|37681160\|ref\|NP_935769.1\| hypothetical protein VV2976 [Vibrio vulnificus YJ016], gi\|37199911\|dbj\|...	215.0	[0..1]	[139..1]
gi\|27364789, gi\|... - gi\|27364789\|ref\|NP_760317.1\| hypothetical protein VV1_1395 [Vibrio vulnificus CMCP6], gi\|27360934\|gb...	214.0	[0..1]	[139..1]
gi\|75854365, gi\|... - gi\|75854365\|ref\|ZP_00762063.1\| COG0432: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	210.0	[0..1]	[139..1]
gi\|91227269, gi\|... - gi\|91227269\|ref\|ZP_01261694.1\| hypothetical protein V12G01_14670 [Vibrio alginolyticus 12G01], gi\|91...	210.0	[0..1]	[139..1]
tr\|D7HHZ0\|D7HHZ0... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_04069 PE=4 SV=1 gi\|116215658, gi... - gi\|75822389\|ref\|ZP_00752025.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae RC385], g...	210.0	[0..1]	[139..1]
gi\|75817959, gi\|... - gi\|75817959\|ref\|ZP_00748203.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|227116779, gi... - gi\|75828355\|ref\|ZP_00757790.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae O395], gi... gi\|121628531, gi... - gi\|75814267\|ref\|ZP_00744881.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae V52], gi\|...	209.0	[0..1]	[139..1]
gi\|49613135, gi\|... - gi\|50122609\|ref\|YP_051776.1\| hypothetical protein ECA3688 [Pectobacterium atrosepticum SCRI1043], gi...	208.0	[0..1]	[139..1]
gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858... gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858...	206.0	[0..2]	[139..3]
gi\|28807742, gi\|... - gi\|28899506\|ref\|NP_799111.1\| hypothetical protein VP2732 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28807742 - gi\|28807742\|dbj\|BAC60995.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	206.0	[0..1]	[139..1]
gi\|42553654, gi\|... - gi\|46125061\|ref\|XP_387084.1\| hypothetical protein FG06908.1 [Gibberella zeae PH-1], gi\|42553654\|gb\|E...	203.0	[0..2]	[139..45]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHQHTIQLR PRARGFHLIT DEIEQQLPQI KRLNVGLLHL FVQHTSASLT INENADPTVR  60
   61 QDMEAHFNHA APEGAPYYRH IDEGDDDMPA HIKSSLLGCS VSIPIQQGRL ALGTWQGIYL 120
  121 GEHRNHGGIR RVIATIQGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1vmjA
Description:	Crystal structure of hypothetical protein (TM0723) from Thermotoga maritima at 1.52 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits