YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15640239, gi\|...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15640239, gi|....

Description	E-value	Query Range	Subject Range
gi\|229506990, gi... - gi\|229506990\|ref\|ZP_04396498.1\| protein YicC [Vibrio cholerae BX 330286], gi\|229356095\|gb\|EEO21014.1... gi\|75830216, gi\|... - gi\|75830216\|ref\|ZP_00759498.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae MO10... gi\|229369153, gi... - gi\|229606498\|ref\|YP_002877146.1\| protein YicC [Vibrio cholerae MJ-1236], gi\|229369153\|gb\|ACQ59576.1\|... gi\|229346733, gi... - gi\|229516307\|ref\|ZP_04405755.1\| protein YicC [Vibrio cholerae RC9], gi\|229346733\|gb\|EEO11703.1\| prot... gi\|229509360, gi... - gi\|229509360\|ref\|ZP_04398843.1\| protein YicC [Vibrio cholerae B33], gi\|229353675\|gb\|EEO18612.1\| prot...	380.0	[0..1]	[288..8]
gi\|75828200 - gi\|75828200\|ref\|ZP_00757635.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae O395... gi\|75816553 - gi\|75816553\|ref\|ZP_00747020.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae V52]	380.0	[0..1]	[288..8]
gi\|116220656, gi... - gi\|75819960\|ref\|ZP_00750020.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae V51]...	380.0	[0..1]	[288..8]
gi\|91190259, gi\|... - gi\|91225013\|ref\|ZP_01260272.1\| putative alpha helix protein [Vibrio alginolyticus 12G01], gi\|9119025...	380.0	[0..1]	[288..1]
gi\|75855755, gi\|... - gi\|75855755\|ref\|ZP_00763397.1\| COG1561: Uncharacterized stress-induced protein [Vibrio sp. Ex25], gi...	378.0	[0..1]	[288..1]
gi\|161486670 - gi\|161486670\|ref\|NP_933071.2\| hypothetical protein VV0278 [Vibrio vulnificus YJ016] gi\|27360399, gi\|... - gi\|27364281\|ref\|NP_759809.1\| hypothetical protein VV1_0833 [Vibrio vulnificus CMCP6], gi\|27360399\|gb...	376.0	[0..1]	[288..1]
gi\|37678462, gi\|... - gi\|37678462\|ref\|NP_933071.1\| uncharacterized stress-induced protein [Vibrio vulnificus YJ016], gi\|37...	375.0	[0..1]	[288..8]
gi\|153837882, gi... - gi\|153837882\|ref\|ZP_01990549.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28896950, gi\|... - gi\|28896950\|ref\|NP_796555.1\| hypothetical protein VP0176 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28805158 - gi\|28805158\|dbj\|BAC58439.1\| putative alpha helix protein [Vibrio parahaemolyticus RIMD 2210633]	374.0	[0..1]	[288..1]
gi\|46911838, gi\|... - gi\|54307418\|ref\|YP_128438.1\| hypothetical protein PBPRA0197 [Photobacterium profundum SS9], gi\|46911...	373.0	[0..1]	[288..1]
gi\|90326255, gi\|... - gi\|90412680\|ref\|ZP_01220681.1\| hypothetical protein P3TCK_22270 [Photobacterium profundum 3TCK], gi\|...	371.0	[0..1]	[288..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYSMTAYAR KEVKGDWGSA VWEIRSVNQR YLETYFRLPE QFRGLEPLLR ERFRQRLSRG  60
   61 KIECHLRFEA NPAAQSHLTI NEGLAQQVIN AANQIMHMTG ELSRINPFQV MQWPGVMETP 120
  121 EQDMDAINQA LLSAFDEGVD EFIAARGREG DNMKALIEQR LQAISAEVVK VRARMPEILE 180
  181 WQRERLFSKF EEAKIE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.091515
Match:	PF03755.4
Description:	No description for PF03755.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDASRVEQEL ILLAQKSDVA EELDRLDSHV KEAREVLKKG GSCGRKLDFM MQEFNRESNT  60
   61 LASKSISTDI TASGVELKVL IEQMREQIQN IE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.585027
Match:	PF08340.2
Description:	No description for PF08340.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.962	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits