YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_PSESM
Organism:	Pseudomonas syringae pv. tomato str. DC3000
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_PSESM.

Description	E-value	Query Range	Subject Range
RNPA_PSEPF - Ribonuclease P protein component OS=Pseudomonas fluorescens (strain Pf0-1) GN=rnpA PE=3 SV=1	133.0	[0..1]	[133..1]
gi\|82716330, gi\|... - gi\|82736599\|ref\|ZP_00899456.1\| ribonuclease P protein [Pseudomonas putida F1], gi\|82716330\|gb\|EAP513...	130.0	[0..1]	[133..33]
RNPA_PSE14 - Ribonuclease P protein component OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) ...	130.0	[0..1]	[133..1]
RNPA_PSEPK - Ribonuclease P protein component OS=Pseudomonas putida (strain KT2440) GN=rnpA PE=3 SV=1 RNPA_PSEPU - Ribonuclease P protein component OS=Pseudomonas putida GN=rnpA PE=3 SV=1	127.0	[0..1]	[133..1]
gi\|49077256 - gi\|49077256\|gb\|AAT49655.1\| PA5569 [synthetic construct]	127.0	[0..1]	[129..2]
RNPA_PSEAE - Ribonuclease P protein component OS=Pseudomonas aeruginosa GN=rnpA PE=3 SV=1 RNPA_PSEAB - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rnpA PE=3 SV=1 RNPA_PSEAE - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ... gi\|126196491, gi... - gi\|84324747\|ref\|ZP_00972802.1\| COG0594: RNase P protein component [Pseudomonas aeruginosa 2192], gi\|... gi\|107104670 - gi\|107104670\|ref\|ZP_01368588.1\| hypothetical protein PaerPA_01005749 [Pseudomonas aeruginosa PACS2]	126.0	[0..1]	[129..2]
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1	126.0	[0..1]	[118..2]
RNPA_PSEA7 - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain PA7) GN=rnpA PE=3 SV=1	125.0	[0..1]	[129..2]
gi\|66048360, gi\|... - gi\|66048360\|ref\|YP_238201.1\| ribonuclease P [Pseudomonas syringae pv. syringae B728a], gi\|63259067\|g...	124.0	[0..11]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRDFSREKR LLTPRHFKAV FDSPTGKVPG KNLLLLARNN DLDHPRLGLV IGKKSVKLSV  60
   61 ERNRLKRLMR ESFRQHQDSL VGWDIVIVAR KGLGDVENPE LIQHFGKLWK RLARSRPTPE 120
  121 EKSEPAGVDS TDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1a6fA
Description:	RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits