YRC Public Data Repository - Protein Structure Prediction

Protein:	RBFA_PSESM
Organism:	Pseudomonas syringae pv. tomato str. DC3000
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBFA_PSESM.

Description	E-value	Query Range	Subject Range
RBFA_PSE14 - Ribosome-binding factor A OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=rbfA...	164.0	[0..1]	[138..1]
RBFA_PSEU2 - Ribosome-binding factor A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rbfA PE=3 SV=1	163.0	[0..1]	[138..1]
RBFA_PSEF5 - Ribosome-binding factor A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rbfA PE=3 SV=1	160.0	[0..1]	[133..1]
RBFA_ACTSZ - Ribosome-binding factor A OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rbfA PE=3 SV=...	159.0	[0..1]	[129..1]
RBFA_ERWCT - Ribosome-binding factor A OS=Erwinia carotovora subsp. atroseptica GN=rbfA PE=3 SV=1 RBFA_PECAS - Ribosome-binding factor A OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rbfA P... gi\|254987507, gi... - gi\|255056670\|ref\|ZP_05308877.1\| ribosome-binding factor A [Pectobacterium wasabiae WPP163], gi\|25498...	158.0	[0..1]	[132..1]
RBFA_SODGM - Ribosome-binding factor A OS=Sodalis glossinidius (strain morsitans) GN=rbfA PE=3 SV=1	158.0	[0..1]	[138..1]
RBFA_PSEA8 - Ribosome-binding factor A OS=Pseudomonas aeruginosa (strain LESB58) GN=rbfA PE=3 SV=1 gi\|194555340, gi... - gi\|84323600\|ref\|ZP_00971669.1\| COG0858: Ribosome-binding factor A [Pseudomonas aeruginosa 2192], gi\|... gi\|107103842 - gi\|107103842\|ref\|ZP_01367760.1\| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]	157.0	[0..1]	[130..1]
gi\|91074162, gi\|... - gi\|91212588\|ref\|YP_542574.1\| ribosome-binding factor A [Escherichia coli UTI89], gi\|91074162\|gb\|ABE0... gi\|237706080, gi... - gi\|237706080\|ref\|ZP_04536561.1\| ribosome-binding factor A [Escherichia sp. 3_2_53FAA], gi\|226899120\|... gi\|26249750, gi\|... - gi\|26249750\|ref\|NP_755790.1\| ribosome-binding factor A [Escherichia coli CFT073], gi\|26110178\|gb\|AAN... gi\|24053639, gi\|... - ref\|NP_708968.1\| ribosome-binding factor A [Shigella flexneri 2a str. 301], gb\|AAN44675.1\| ribosome... gi\|226839957, gi... - gi\|254038333\|ref\|ZP_04872391.1\| ribosome-binding factor A [Escherichia sp. 1_1_43], gi\|226839957\|gb\|...	157.0	[0..1]	[132..7]
gi\|49077912 - gi\|49077912\|gb\|AAT49730.1\| PA4743 [synthetic construct]	157.0	[0..1]	[129..1]
RBFA_PASMU - Ribosome-binding factor A OS=Pasteurella multocida (strain Pm70) GN=rbfA PE=3 SV=1 RBFA_PASMU - Ribosome-binding factor A OS=Pasteurella multocida GN=rbfA PE=3 SV=1	157.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEYSRTQR IGDQMQRELA QLIRREIKDP RVGLVTITAV DVSRDVGHAK IFMTVMGQDN  60
   61 AEDIAQTIKV LNAAAGFLRM QLAREMKLRS VPQLHFHYDE SVVRGAHLSA LIERAVAQDS 120
  121 QHQEGPASPD AKPESTEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	1josA
Description:	Ribosome-binding factor A, RbfA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits