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View Structure Prediction Details

Protein: gi|37537172, gi|...
Organism: Oryza sativa Japonica Group
Length: 810 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37537172, gi|....

Description E-value Query
Range
Subject
Range
gi|50933001, gi|... - gi|55733872|gb|AAV59379.1| putative early-responsive to dehydration stress protein (ERD4) [Oryza sat...
gi|125553558 - gi|125553558|gb|EAY99267.1| hypothetical protein OsI_21231 [Oryza sativa Indica Group]
544.0 [0..1] [752..1]
CSC1_ARATH - Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana GN=CSC1 PE=2 SV=1
534.0 [0..1] [756..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLPDLGVS AFINILGAFV FLLIFAALRL QPINDRVYFP KLYLTGQRRH HPHPHGFVNL  60
   61 DLCSYLRFLA WVPGALRM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQPDLIHHAG LDSAVYLRIY TLGLKIFLPI MTVALLVLIP VNVSGGTLLN LRKEIVFSDI  60
   61 DKLSISNVNP GSNRFFIHLL MAYVFTFWTC FMLYKEYSNV AFMRLHFLAS QKRCADQFTV 120
  121 IVRNIPHVSS HSTSETVDEF FRRNHPDHYL GQQAVYNANR YAKLVKKKER LQNWL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYYQLKFERH PGKRPIGRTG CLGFCGREVD QIDYYRARIS ELDKKLASER QRVLNDPKAV  60
   61 MPVAFVTFDS RWGAAVCAQT QQSKNPTQWL TDWAPEPRDV YWQNLAI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [361-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFFSLSIRKF LISIAVFALV FFYMIPIAFV QSLANLEGIE KVAPFLRPVI DTPVVKSFLQ  60
   61 GFLPGLALKI FLYILPTVLM IMSKVEGYVS LSSLERRAAS KYYYFMLVNV FLGSIIAGTA 120
  121 FEQLNAFFHQ PPSQIPRTIG VA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [503-726]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPMKATFFMT YIMVDGWAGI ANEILRVKPL VIYHLKNMFI VKTERDRERA MDPGSIGLAE  60
   61 NLPSLQLYFL LGLVYAVVTP ILLPFIIIFF AFAFLVYRHQ IINVYNQEYE SAAAFWPQVH 120
  121 SRIIASLLIS HVTLFGLMST MKAAYSTPLL IFLPLLTIWF HKYCKSRFEP AFRKYPLEEA 180
  181 MEKDNLERTS EPNLNLKSYL QNAYLHPIFH MFEQQQQQEQ EQQR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [727-810]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEKVEVRIDK AQQHHHRQVE EEEEESKSSQ ATTHYYHHHH EQTTTTTHHH YHQHEHMSHY  60
   61 HMGPSDTADS PSPPHFVYHY GVDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle