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View Structure Prediction Details

Protein: gi|110288837, gi...
Organism: Oryza sativa Japonica Group
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110288837, gi....

Description E-value Query
Range
Subject
Range
gi|110289212 - gi|110289212|gb|ABG66125.1| HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, e...
285.0 [0..2] [329..69]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPCSPSGK KRDKMRKKEI VLWCNIKALP GANRLIKHLK SNGVPAALAS NSPGSNIEAK  60
   61 ISCHQGWKES FSAIVGGDEV EKGKPSPDIF LEAAKRMNTN PPNCLVIEDS LCCSWKSCRN 120
  121 ACIAVPSVPK RTAEFSSADE VINSLLDVRP EKWGLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 2hszA
Description: No description for 2hszA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009
nucleic acid binding 0.263520144636139 bayes_pls_golite062009
phosphatase activity 0.159899259988948 bayes_pls_golite062009
hydrolase activity 0.157008618907775 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.103902756538853 bayes_pls_golite062009
DNA binding 0.0142681844140111 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [157-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSDWIDDTL PIEPWFIGGS VIKGFGRGSK VLGIPTANLP AENFSDVLSE HTSRVYFGWA  60
   61 GLSTRGIYKM VMSIGWNPYF DNTEKTIEPW LLHDFGEDFY GEELRLVIVG YIRPEANFPS 120
  121 LESLIERIHE DARIAEKALN LPLYAKYTDS PYLRNSLKED NSANGNQSVI DSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 1q9sA
Description: Crystal structure of riboflavin kinase with ternary product complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin kinase activity 9.29267848240079 bayes_pls_golite062009
FMN adenylyltransferase activity 7.46254172012226 bayes_pls_golite062009
kinase activity 2.06841232315201 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 2.04516341526682 bayes_pls_golite062009
adenylyltransferase activity 2.0444249049462 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.03375669869689 bayes_pls_golite062009
catalytic activity 2.03120709726017 bayes_pls_golite062009
transferase activity 1.98609814060536 bayes_pls_golite062009
nucleotidyltransferase activity 1.19728391053646 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle