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View Structure Prediction Details

Protein: gi|34894492, gi|...
Organism: Oryza sativa Japonica Group
Length: 635 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34894492, gi|....

Description E-value Query
Range
Subject
Range
gi|22328699 - gi|22328699|ref|NP_567482.2| lipase class 3 family protein [Arabidopsis thaliana]
452.0 [0..1] [628..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTATMATAV GAAVVLYFVL SRRLAQEDGG GGGGGGGGGG KRRRVRAARR PAQPPATWIE  60
   61 AVGTLAETLR FTYSETLGKW PIGDLAFGIK YLMRRQGNLH VASVYAGNNC IELK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 9.721246
Match: PF03893.7
Description: No description for PF03893.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPEIMEELIV LRRLIDLCFL FSKKPFPVFL ELAGFSPEDV LIEEPKAGIL KPAHTILRDE  60
   61 CTKSFLVLIR GTHSMKDTLT AATGAVVPFH HSLLDEGGVS KLVLGYAHCG MVAAARWIAR 120
  121 SITPCLCQAV SQCPDYQIRV VGHSLGGGTA ALLTYILREH QELSSTTCVA FAPASCMTWE 180
  181 LAESGKHFVR TIVNGADLVP TVSTSSIDDL RSEVTASSWL NDLRDQIQQT RFLNVVYRSA 240
  241 TALGTRLQSF SGARDRVAGA GALLRPVSSK TQVVMKQAQN VAQAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.154902
Match: 1dt3A
Description: Triacylglycerol lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [400-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARSRSAFSSW SCMGARRRGV GVVAASAKEE ITVETHVTST TNSESYVVEQ RGTKTMEELQ  60
   61 YTADSVSVHE ETEEEALLSE HESSREHAEE EITEGEMWFQ YEKDLDRQAE VEAQTRQEEA 120
  121 AAAKEIMEEE SAVLKNVEDR QSFSSDSLER QQFYPPGRIM HMVAMPPADS CPDDPVAADE 180
  181 CSVGIYETPR DLYSKIRLSN TMINDHYMPM YKKTMEILIE KFANNDENFC TDSTVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle