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View Structure Prediction Details

Protein: gi|215740684, gi...
Organism: Oryza sativa Japonica Group
Length: 723 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215740684, gi....

Description E-value Query
Range
Subject
Range
RER6_ARATH - Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana GN=RER6 PE=2 SV=1
671.0 [0..31] [719..50]
gi|92877971 - gi|92877971|gb|ABE84885.1| Trimeric LpxA-like [Medicago truncatula]
668.0 [0..39] [711..76]
gi|52353677, gi|... - gi|52353677|gb|AAU44243.1| unknown protein [Oryza sativa Japonica Group], gi|222631939|gb|EEE64071.1...
gi|218196966 - gi|218196966|gb|EEC79393.1| hypothetical protein OsI_20317 [Oryza sativa Indica Group]
616.0 [0..156] [719..1]
gi|116310947, gi... - gi|125549075|gb|EAY94897.1| hypothetical protein OsI_16697 [Oryza sativa Indica Group], gi|116310947...
372.0 [0..393] [683..115]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPPAPTRNP GACRFIPLLP PKPLLSPAAA AASSRGGLCV AAASRRDFLL LVPSIAAAST  60
   61 VLQSLPLSAS AADDEKQAAS PAPGPAAAPA PTSAGEP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAEALSRVYD ATVIGEPQAV GKDARRRVWE KLMAARVVYL GEAELVPDRD DRVLELEVVR  60
   61 KLAARCAEAG RSISLALEAF PCNLQEQLNQ FMDRRIDGNN LRLYTSHWAP ERWQEYEPLL 120
  121 NYCRDNGVKL VACGTPLEVS RTVQAEGIRG LSKAQRKLYA PPAGSGFISG FTSISGRSLI 180
  181 DKISAIHGSP FGPSSYLSAQ ARVVDDYTMS QKIMKEITNG YPSGMLVVVT GSSHVIYGSR 240
  241 GIGVPARISK KMQKKKQVVV LLNPERQGIR REGEIPVADF LWYSAAKPCS RNC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.221849
Match: 2g5gX
Description: No description for 2g5gX was found.

Predicted Domain #3
Region A:
Residues: [391-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDRAEIARVM NAAGRRREAL PQDLQKGIDL GVVSPEILQN FFDLEKYPVM AELIHRFQGF  60
   61 RERLLADPKF LHRLAIEEGI SITTTLIAQY EKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [484-723]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGRFLEEIDY VLTDTIRGSV VDFFTVWLPA PTISLLSLGD NGSGESLELL KGLLGSLPDN  60
   61 AFQKGIMGQS WNTNQRFASV LMGGIKLAGV GFISSIGAGV ASDVLYAARR VLRPSTSVET 120
  121 ARRRTPIWKS ATVYSCFLGT SANLRYQVIA GLVEHRLGEY LMAYYNQPLL ANLLSFVSRT 180
  181 INSYWGTQQW IDLARATGLQ TSKKELPSPE ISNLPDMPLL ECGTTEVQNM DDSNKQQPMK 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle