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View Structure Prediction Details

Protein: gi|215737391, gi...
Organism: Oryza sativa Japonica Group
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215737391, gi....

Description E-value Query
Range
Subject
Range
gi|30013657 - gi|30013657|gb|AAP03871.1| oxygen evolving complex 33 kDa photosystem II protein [Nicotiana tabacum...
554.0 [0..1] [333..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASLQAAAT LMQPAKLGGR ASSAALPSRP SSHVARAFGV DTGAAGRITC SLQSDIREVA  60
   61 NKCADAAKLA GFALATSALL VSGASAEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRRLTFDEI QSKTYMEVKG TGTANQCPTV EGGVDSFAFK AGKYNMKKFC LEPTSFTVKA  60
   61 EGVAKNAPPE FQKTKLMTRL TYTLDEIEGP LEVSSDGTIK FEEKDGIDYA AVTVQLPGGE 120
  121 RVPFLFTIKN LVATGKPESF GGPFLVPSYR GSSFLDPKGR GGSTGYDNAV ALPAGGRGDE 180
  181 EELAKENVKN ASSSTGNITL SVTKSKPETG EVIGVFESVQ PSDTDLGAKV PKDVKIQGVW 240
  241 YAQLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.39794
Match: 1s5lO
Description: Architecture of the photosynthetic oxygen evolving center
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle