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View Structure Prediction Details

Protein: CLPB2_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 978 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CLPB2_ORYSJ.

Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAPPLAAG LRPAMAAAQA PVVAAAWGVG ARRGAALSSS ARCRALRLSR GGGGGRDGWV  60
   61 PPPVVGRMPP RTLSVRCAAS NGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.30103
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [84-978]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITQQEFTEMA WQSIVSSPEV AKESKHQIVE TEHLMKSLLE QRNGLARRIF SKAGVDNTRL  60
   61 LDATEKFIQR QPKVLGEDPG SMLGRDLEAL IQRARDFKKE YGDSFVSVEH LVLGFAEDKR 120
  121 FGRQLFKDFQ ITVQSLKTAI ESIRGKQNVI DQDPEGKYEA LDKYGKDLTA MARQGKLDPV 180
  181 IGRDDEIRRC IQILSRRTKN NPVLIGEPGV GKTAIAEGLA QRIVQGDVPQ ALTNRRLIAL 240
  241 DMGALIAGAK YRGEFEDRLK AVLKEVTDSD GQTILFIDEI HTVVGAGATN GAMDAGNLLK 300
  301 PMLGRGELRC IGATTLDEYR KYIEKDPALE RRFQQVYVDQ PSVEDTISIL RGLRERYELH 360
  361 HGVRISDSAL VAAALLSDRY ISGRFLPDKA IDLVDESAAK LKMEITSKPT ALDEIDRAVI 420
  421 KLEMERLSLT NDTDKASRDR LSRIEAELSL LKEKQKDLTE QWEREKSVMT KIQSIKEEID 480
  481 RVNVEIQQAE REYDLNRAAE LKYGSLNALQ RQLQTTEKEL DEYQSSGKSM LREEVTQDDI 540
  541 AEIVSRWTGI PVSKLKQSDR EKLLYLEEEL HKRVVGQDPA VKAVSEAIQR SRAGLSDPNR 600
  601 PIASFMFMGP TGVGKTELAK ALAAFMFNTE EAVVRIDMSE YMEKHSVSRL IGAPPGYVGY 660
  661 EEGGQLTEAV RRRPYSIILF DEIEKAHGDV FNVFLQILDD GRVTDSQGRK VSFTNSIIIM 720
  721 TSNVGSQFIL NMDEEGGSTD SAYENIKKRV MDAARSVFRP EFMNRIDEYI VFKPLEREQI 780
  781 NSIVKLQLAR VQKRIADRKI KLEVSPGAVE FLGSLGYDPN YGARPVKRVI QQYVENELAK 840
  841 GILRGDFKDE DSILVDTQVT VPSNGQLPQQ KLVFHKMSEE SAPAAAEDEK FLPAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle