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View Structure Prediction Details

Protein: gi|41469489, gi|...
Organism: Oryza sativa Japonica Group
Length: 474 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41469489, gi|....

Description E-value Query
Range
Subject
Range
gi|15228863, gi|... - gi|9279699|dbj|BAB01256.1| unnamed protein product [Arabidopsis thaliana], gi|15228863|ref|NP_188920...
544.0 [0..22] [470..15]

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Predicted Domain #1
Region A:
Residues: [1-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDHHHHHHP RRGSRHAAAG DLRPPEPPLD PLEFLSRSWS ASASALDAPR PPPPAPSPSA  60
   61 VLGIGPIAED ASSAATAACE VVDDGSAFAA AGSSFSFASA ATSQLIMERI LAQSEVAPLT 120
  121 SGRLSHSSGP LTGGGSITDS PPVSPEIDDA KYCRAASTPK PQMYRGGNKT VGRWLKDRKE 180
  181 KKKEETRAHN AQVHAAVSVA AVAAAVAAVA AATAAASGSG KDDRAARTDM AMASAATLVA 240
  241 AQCVEAAESM GAEREHLEAV IGSAVNVRTP GDIVTVTAAA ATA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.953
Match: 2nsgA
Description: No description for 2nsgA was found.

Predicted Domain #2
Region A:
Residues: [284-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRGAATLKAR ALKEVWNIAA VIPVEKGTMG GGHHHKQNMQ KQHRKLESNG SSISDDLSLE  60
   61 EENNFLGICS QELL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARGTELLKRT RKGALHWKVV SVYINRMGLV MLKMKSRHVA GTITKKKKSV VIDVCKDVAA  60
   61 WPGRHLLEDG EHRRYFGLRT AEHRVIEFEC TSQREYEMWT KGVARLLIIA SERKRAP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 65.39794
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle