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View Structure Prediction Details

Protein: gi|41469444, gi|...
Organism: Oryza sativa Japonica Group
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41469444, gi|....

Description E-value Query
Range
Subject
Range
gi|92868144, gi|... - gi|92868144|gb|ABE78230.1| PAP fibrillin [Medicago truncatula], gi|124360438|gb|ABN08448.1| PAP fibr...
260.0 [0..7] [262..2]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLVSLSLP LPCAVPASSL PPRAEPDASS SFHPPASSSS SPRGGRLALA AAQPGSGRRW  60
   61 VGRWRAGVSS FSFLAPFFAG NK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKENREKAER LKEELLATIR PLDRGVDATA EDKERVEKIV QQLEEVNQVK EPLKSDLLNG  60
   61 KWELLYTTSE SILQPQRPKF LRPFGTIYQA INTDTLRAQN METWPYFNQV TANLVPLNSR 120
  121 RVAVRFDYFK IFNLISIKAP GSGKGELEIT YLDEELRASR GDKGNLFILK MVDPTYRVPL 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 45.39794
Match: PF04755.3
Description: No description for PF04755.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle