YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28273356, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28273356, gi|....

Description	E-value	Query Range	Subject Range
gi\|88772635, gi\|... - gi\|88796049\|ref\|ZP_01111734.1\| putative membrane-bound lytic murein transglycosylase [Alteromonas ma...	135.0	[0..6]	[215..370]
gi\|83590119, gi\|... - gi\|83590119\|ref\|YP_430128.1\| peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073], gi\|8357...	134.0	[0..5]	[214..26]
gi\|20807784 - gi\|20807784\|ref\|NP_622955.1\| LysM-repeat proteins and domains [Thermoanaerobacter tengcongensis MB4] gi\|20807784, gi\|... - gi\|20807784\|ref\|NP_622955.1\| LysM repeat-containing protein [Thermoanaerobacter tengcongensis MB4], ...	133.0	[0..5]	[214..23]
gi\|114227538, gi... - gi\|78701285\|ref\|ZP_00865737.1\| Peptidoglycan-binding LysM [Alkalilimnicola ehrlichei MLHE-1], gi\|785...	133.0	[0..7]	[212..347]
gi\|78358619, gi\|... - gi\|78358619\|ref\|YP_390068.1\| peptidoglycan-binding LysM [Desulfovibrio desulfuricans subsp. desulfur...	133.0	[0..7]	[215..369]
gi\|83645316, gi\|... - gi\|83645316\|ref\|YP_433751.1\| lytic murein transglycosylase [Hahella chejuensis KCTC 2396], gi\|836333...	132.0	[0..7]	[215..386]
gi\|7519897 - pir\|\|F70357 lipoprotein - Aquifex aeolicus gi\|2983249, gi\|1... - gi\|2983249\|gb\|AAC06844.1\| lipoprotein [Aquifex aeolicus VF5], gi\|15606073\|ref\|NP_213450.1\| lipoprote...	131.0	[0..7]	[214..28]
gi\|83858677, gi\|... - gi\|83858677\|ref\|ZP_00952199.1\| putative metalloendopeptidase [Oceanicaulis alexandrii HTCC2633], gi\|...	129.0	[0..6]	[220..42]
gi\|84327848 - gi\|84327848\|ref\|ZP_00975862.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory...	128.0	[0..7]	[220..334]
gi\|53727901 - gi\|53727901\|ref\|ZP_00139467.2\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|84321274 - gi\|84321274\|ref\|ZP_00969632.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|107101244 - gi\|107101244\|ref\|ZP_01365162.1\| hypothetical protein PaerPA_01002277 [Pseudomonas aeruginosa PACS2]	128.0	[0..7]	[220..334]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGSNDFPG DLLRAVLQRL PPPDLARAAC VCRLWRGVAS DRAVLEAAFA SPWGVRRVVG  60
   61 EPETRAFWRA ASLAR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.76
Match:	2e31A
Description:	No description for 2e31A was found.

Predicted Domain #2

Region A:
Residues: [76-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FALSHTVRRG DTVPGIALKY SIQVTDIKRF NNMMSDHGIY LRERLLIPIS NPEILQGST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	2djpA
Description:	No description for 2djpA was found.

Predicted Domain #3

Region A:
Residues: [135-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CYIEMDYNAR REVAVFYPQG RPSGKAESST NTAAAERRSR RILESVKRSL HTDDRTAAYY  60
   61 LSVTDGDPRA AMMEYSEDLR WERQQTGH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits