YRC Public Data Repository - Protein Structure Prediction

Protein:	ELOF1_ORYSJ
Organism:	Oryza sativa Japonica Group
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELOF1_ORYSJ.

Description	E-value	Query Range	Subject Range
gi\|49525268 - gi\|49525268\|emb\|CAG58881.1\| unnamed protein product [Candida glabrata] gi\|50287065, gi\|... - gi\|50287065\|ref\|XP_445962.1\| unnamed protein product [Candida glabrata], gi\|49525268\|emb\|CAG58881.1\|...	140.0	[0..1]	[88..1]
gi\|50312049, gi\|... - gi\|50312049\|ref\|XP_456056.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645192\|emb\|CAG9876... gi\|49645192 - gi\|49645192\|emb\|CAG98764.1\| KLLA0F21868p [Kluyveromyces lactis]	140.0	[0..1]	[88..1]
gi\|238880026 - gi\|238880026\|gb\|EEQ43664.1\| transcription elongation factor 1 [Candida albicans WO-1] orf19.6623, orf1... - orf19.6623 CGDID:CAL0003980 Assembly 19, Contig19-10251 (3081, 2695) CDS, reverse complemented, tran... gi\|68488889, gi\|... - gi\|68488889\|ref\|XP_711689.1\| hypothetical protein CaO19.6623 [Candida albicans SC5314], gi\|68487892\|...	139.0	[0..1]	[88..1]
gi\|90301238, gi\|... - gi\|90301238\|gb\|EAS30869.1\| hypothetical protein CIMG_06348 [Coccidioides immitis RS], gi\|119182660\|r...	137.0	[0..1]	[89..1]
ELF1_YEAST - Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 P... ELF1 - Transcription elongation factor that contains a conserved zinc finger domain; implicated in the main... gi\|190409683 - gi\|190409683\|gb\|EDV12948.1\| transcription elongation factor 1 [Saccharomyces cerevisiae RM11-1a]	137.0	[0..1]	[87..1]
gi\|44983882 - gi\|44983882\|gb\|AAS52918.1\| AER237Wp [Ashbya gossypii ATCC 10895] gi\|45190840, gi\|... - gi\|45190840\|ref\|NP_985094.1\| AER237Wp [Ashbya gossypii ATCC 10895], gi\|44983882\|gb\|AAS52918.1\| AER23...	136.0	[0..1]	[88..1]
gi\|50423133, gi\|... - gi\|50423133\|ref\|XP_460147.1\| hypothetical protein DEHA0E20471g [Debaryomyces hansenii CBS767], gi\|49... gi\|49655815 - gi\|49655815\|emb\|CAG88420.1\| DEHA2E19360p [Debaryomyces hansenii]	134.0	[0..1]	[89..1]
gi\|195556994, gi... - gi\|195556994\|ref\|XP_002077227.1\| GD25376 [Drosophila simulans], gi\|194202320\|gb\|EDX15896.1\| GD25376 ... gi\|195359298, gi... - gi\|195359298\|ref\|XP_002045341.1\| GM19294 [Drosophila sechellia], gi\|194129331\|gb\|EDW51374.1\| GM19294... gi\|220959684 - gi\|220959684\|gb\|ACL92385.1\| CG40228-PC [synthetic construct] FBpp0306002, CG4... - This gene is referred to in FlyBase by the symbol Dmel\CG40228 (CG40228, FBgn0063670). It is a prote...	131.0	[0..1]	[81..1]
gi\|42554650, gi\|... - gi\|46126197\|ref\|XP_387652.1\| hypothetical protein FG07476.1 [Gibberella zeae PH-1], gi\|42554650\|gb\|E...	131.0	[0..1]	[87..1]
CE22483 - status:Confirmed UniProt:Q9XVZ8 protein_id:CAA22454.1	131.0	[0..1]	[82..1]

Back

Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKSAAKP PPKKRMDKLD TVFSCPFCNH GSSVECRIDM KNLIGEASCR ICQENFSTTV  60
   61 NALTEPIDIY SEWIDECERV NNVEDDDGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1wiiA
Description:	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits