YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|50508518, gi|...
Organism: Oryza sativa Japonica Group
Length: 522 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50508518, gi|....

Description E-value Query
Range
Subject
Range
gi|55793070 - gi|55793070|gb|AAV65581.1| folic acid synthesis protein [synthetic construct]
530.0 [0..3] [520..238]

Back

Predicted Domain #1
Region A:
Residues: [1-52]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSVAKNYCG GGLAASDALS VSALGRSLKP SRKASRHVVP CRARSFTQCS LG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.30103
Match: 2cg8A
Description: No description for 2cg8A was found.

Predicted Domain #2
Region A:
Residues: [53-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSADQEIVI ALGSNVGDRI STFDRALRMM KNSGVNITRH ACLYETSPAY VTDQPRFLNS  60
   61 AVRGTTKLEP HELLKKLKEI EKDIGRTDGI RYGPRPIDLD ILLYGKSHIS TENLTVPHER 120
  121 IHERPFVLAP LVDLLGSSTD DNVEKSWHSL AKCTGGFFES WDKLGGESII GTEGIKRVLP 180
  181 VGNRLLDWSE RTLVMGVLNL TPDSFSDGGK FQEVEAAIAQ TKLLISEGAD IIDIGAQSTR 240
  241 PLARRLSADE ELERLVPVLD AITGIPEMEG KLLSVDTFYA EVAAEAVKRG VHIVNDVSGG 300
  301 QIDPRILEVV AELGVPYVTM HMRGDPSTMQ SEQNLLYGDV CKEVASELYK RVRQAELSGI 360
  361 PLWRIVLDPG IGFSKNSKHN LEVIMGLESI RTEIGKMSLG ASHVPILLGP SRKRFLGEIC 420
  421 NRVNPTERDA ATMVVATAGI LNGANIVRVH NVKYGVDTAK VSDALSKGRR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 2bmbA
Description: X-ray structure of the bifunctional 6-hydroxymethyl-7,8- dihydroxypterin pyrophosphokinase dihydropteroate synthase from Sacchromyces cerevisiae
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle