YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34899808, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	615 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34899808, gi|....

Description	E-value	Query Range	Subject Range
gi\|113611556, gi... - gi\|115472843\|ref\|NP_001060020.1\| Os07g0567300 [Oryza sativa (japonica cultivar-group)], gi\|113611556...	641.0	[0..1]	[581..1]
gi\|7268785, gi\|5... - gi\|7268785\|emb\|CAB78991.1\| putative protein [Arabidopsis thaliana], gi\|5738362\|emb\|CAB52870.1\| putat...	536.0	[0..18]	[605..12]
gi\|85719350 - gi\|85719350\|gb\|ABC75355.1\| Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-...	494.0	[0..11]	[615..4]
gi\|109094415 - gi\|109094415\|ref\|XP_001107622.1\| PREDICTED: alpha 1,4-galactosyltransferase [Macaca mulatta]	308.0	[0..303]	[615..41]
A4GAT_GORGO - Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 ... gi\|7593036 - gi\|7593036\|dbj\|BAA94505.1\| alpha-1,4-N-acetylglucosaminyltransferase/alpha- 1,4-galactosyltransferas...	301.0	[0..303]	[615..15]
gi\|197099292 - gi\|197099292\|ref\|NP_001125876.1\| alpha 1,4-galactosyltransferase [Pongo abelii] gi\|55729514 - gi\|55729514\|emb\|CAH91488.1\| hypothetical protein [Pongo abelii]	298.0	[0..303]	[615..41]
gi\|34421674, gi\|... - gi\|34421674\|gb\|AAQ68076.1\| globotriaosylceramide/CD77 synthase [Homo sapiens], gi\|33115183\|gb\|AAH552...	290.0	[0..303]	[615..41]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRSHSHPA ARRRSGLGAQ LCAVVAALLL LVSLAVLHSR LSSSSSSPFP LSSSGDGVSN  60
   61 SSLVEDEDDG AAVLDPTVTI TATTTTTTTT TNAAADSTTD ASSVSNPEDD PIDELDVLDE 120
  121 DTASGLGAAD EV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.496	c.51.3	B12-dependend dehydatases associated subunit
View	Download	0.373	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.303	d.82.1	Copper amine oxidase, domain N
View	Download	0.292	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View	Download	0.280	d.82.1	Copper amine oxidase, domain N
View	Download	0.272	d.237.1	Hypothetical protein YjiA, C-terminal domain
View	Download	0.250	d.82.2	Frataxin-like
View	Download	0.245	g.52.1	Inhibitor of apoptosis (IAP) repeat

Predicted Domain #2

Region A:
Residues: [133-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASASASSLV WDHAVGVARL PFRLPAAGDP LPAGLPHLEP AHRIAAAAFG SDDEPVDLEL  60
   61 RVEISSIAGV EDALLLKPAS SAPETPLRAG WARWLEGKAD YLRRDRMLRS NLEFLNPRNH 120
  121 PLLQDPDSPG LTSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.724	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.601	N/A	N/A	f.32.1	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
View	Download	0.586	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.576	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.573	N/A	N/A	a.1.1	Globin-like
View	Download	0.573	N/A	N/A	a.1.1	Globin-like
View	Download	0.572	N/A	N/A	a.29.13	Description not found.
View	Download	0.539	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.427	N/A	N/A	a.25.1	Ferritin-like

Predicted Domain #3

Region A:
Residues: [267-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRGDRMVHRM LLAEIEKAAS KNFERRSLQS SDIKQGMGVT EKVQQRRWGY YPGIDPHLGF  60
   61 NEFMEKFFEH GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.890	a.4.1	Homeodomain-like
View	Download	0.879	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.879	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.857	a.4.1	Homeodomain-like
View	Download	0.856	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.836	a.4.1	Homeodomain-like
View	Download	0.836	a.4.1	Homeodomain-like
View	Download	0.774	a.64.1	Saposin
View	Download	0.757	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.753	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #4

Region A:
Residues: [339-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSVKVFMVWN SPQWAYGVRH QRGLESLLRQ HPEACVVMLS ETLELEFFQE FVKEGYKVAV  60
   61 ALPNLDELLE GTLTHDFVSV WNEWRKTKYY PLHYSELVRL AALYKYGGIY LDSDVVVLKP 120
  121 LNALRNSIGV VKQVS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.552842
Match:	PF04488.6
Description:	No description for PF04488.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.853	N/A	N/A	c.1.2	Ribulose-phoshate binding barrel
View	Download	0.760	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.758	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.722	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.722	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.700	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.700	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.675	N/A	N/A	c.95.1	Thiolase-like
View	Download	0.653	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain

Predicted Domain #5

Region A:
Residues: [474-615]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENSSFSGAVL AFEKNSPFLA ECLKEFHSTY DDELLQWNGA ELMTRVIRNM SDKADDNSGH  60
   61 LDIKFEPSVA FYPISSTDIT RYFSEADSTD ERAQHDALFS RIVNDSTTFH LWNSITSSLV 120
  121 PEPNSLVERI LNRYCLHCLD VL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.60206
Match:	PF04572.3
Description:	No description for PF04572.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.526	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.526	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.422	N/A	N/A	c.23.5	Flavoproteins
View	Download	0.414	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.398	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.398	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.394	N/A	N/A	d.379.1	Description not found.
View	Download	0.387	N/A	N/A	c.1.12	Phosphoenolpyruvate/pyruvate domain
View	Download	0.386	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase
View	Download	0.361	N/A	N/A	d.92.2	beta-N-acetylhexosaminidase-like domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits