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View Structure Prediction Details

Protein: gi|50935731, gi|...
Organism: Oryza sativa Japonica Group
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50935731, gi|....

Description E-value Query
Range
Subject
Range
gi|90297938, gi|... - gi|90297938|gb|EAS27569.1| hypothetical protein CIMG_10174 [Coccidioides immitis RS], gi|119173385|r...
315.0 [0..2] [228..3]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDVIWHCI RHNHCSFMAK ITTGIFCRNP YNATGICNRS SCPLANSRYA TIRDHDGIFY  60
   61 LYMKTAERAH HPNKLWERVK LPRNYEKAIE VINRHLEFWP KLLVHKIKQR LTKMTQYRIR 120
  121 MRKLRLKVSY PFKVLDMEKG DVDPEEDEEE EVEEYVEGDY MDDMEDMEDF EGLPGGDYGE 180
  181 MNEDD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.823909
Match: PF04874.5
Description: No description for PF04874.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDERIAKKP KVLGSDLRSN IGKKSKKPTE VELDEDIIYG YQAKDVNMKG VDQVVVNRFL  60
   61 VWMAYLPTDV AVFVLGQLAL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle