YRC Public Data Repository - Protein Structure Prediction

Protein:	SUS1_ARATH
Organism:	Arabidopsis thaliana
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUS1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50731850 - gi\|50731850\|ref\|XP_418387.1\| PREDICTED: similar to e(y)2 protein; DC6 protein; e(y)2 homolog; enhanc...	155.0	[0..19]	[114..229]
gi\|109087263 - gi\|109087263\|ref\|XP_001087516.1\| PREDICTED: similar to e(y)2 protein [Macaca mulatta]	152.0	[0..16]	[114..52]
gi\|114621341 - gi\|114621341\|ref\|XP_001135431.1\| PREDICTED: similar to DC6 [Pan troglodytes]	149.0	[0..16]	[114..30]
gi\|215767677, gi... - gi\|215767677\|dbj\|BAG99905.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115441877\|ref...	144.0	[0..1]	[112..1]
ENY2_MOUSE - Transcription and mRNA export factor ENY2 OS=Mus musculus GN=Eny2 PE=1 SV=1 gi\|149721612 - gi\|149721612\|ref\|XP_001495477.1\| PREDICTED: similar to mCG145920 isoform 1 [Equus caballus] gi\|109482159, gi... - gi\|194474074\|ref\|NP_001124052.1\| enhancer of yellow 2 homolog [Rattus norvegicus], gi\|149066438\|gb\|E... ENSMMUT000000085... - null, null ENSCJAT00000012432 - null ENY2 - enhancer of yellow 2 homolog (Drosophila) gi\|57095302, gi\|... - gi\|73974326\|ref\|XP_860311.1\| PREDICTED: similar to e(y)2 protein isoform 5 [Canis familiaris], gi\|73... tr\|M3XCF2\|M3XCF2... - Transcription and mRNA export factor ENY2 OS=Felis catus GN=ENY2 PE=3 SV=1 ENSPTRT00000037945 - null ENY2_BOVIN - Transcription and mRNA export factor ENY2 OS=Bos taurus GN=ENY2 PE=3 SV=1 gi\|194035670, gi... - gi\|194035676\|ref\|XP_001926701.1\| PREDICTED: similar to mCG145920 [Sus scrofa], gi\|194035670\|ref\|XP_0...	143.0	[0..16]	[114..2]
ENY2_XENLA - Transcription and mRNA export factor ENY2 OS=Xenopus laevis GN=eny2 PE=3 SV=1	138.0	[0..20]	[114..1]
gi\|47207340 - gi\|47207340\|emb\|CAF92801.1\| unnamed protein product [Tetraodon nigroviridis]	131.0	[0..23]	[114..3]
ENY2_DANRE - Transcription and mRNA export factor ENY2 OS=Danio rerio GN=eny2 PE=3 SV=1	129.0	[0..23]	[114..3]
gi\|63748712, gi\|... - gi\|94409272\|ref\|XP_993917.1\| PREDICTED: similar to e(y)2 protein [Mus musculus], gi\|63748712\|ref\|XP_...	129.0	[0..20]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHSVNRPPT PDEDDVADGF EKDKVTLREI INVKLVESGE KENLMELVRD RLVECGWKDE  60
   61 MRIACREHVK KKGRKDVTVD ELIRVITPKG RASVPDSVKA ELLNRIQNFI VSAAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.838	a.39.1	EF-hand
View	Download	0.773	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.773	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.727	a.39.1	EF-hand
View	Download	0.727	a.39.1	EF-hand
View	Download	0.718	a.39.1	EF-hand
View	Download	0.701	a.4.3	ARID-like
View	Download	0.700	a.39.1	EF-hand
View	Download	0.648	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.632	a.39.1	EF-hand
View	Download	0.336	c.43.1	CoA-dependent acyltransferases
View	Download	0.309	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.240	d.34.1	DNA-binding domain of Mlu1-box binding protein MBP1
View	Download	0.238	d.45.1	ClpS-like
View	Download	0.226	d.45.1	ClpS-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits