YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115470783, gi...
Organism:	Oryza sativa Japonica Group
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115470783, gi....

Description	E-value	Query Range	Subject Range
gi\|68193392, gi\|... - gi\|69274952\|ref\|ZP_00610864.1\| HNH endonuclease [Mesorhizobium sp. BNC1], gi\|68193392\|gb\|EAN08044.1\|...	199.0	[0..95]	[281..1]
gi\|85709598, gi\|... - gi\|85709598\|ref\|ZP_01040663.1\| HNH endonuclease family protein [Erythrobacter sp. NAP1], gi\|85688308...	199.0	[0..74]	[281..3]
gi\|25352678, gi\|... - pir\|\|AI2991 conserved hypothetical protein Atu3539 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17937246, gi\|... - gi\|17937246\|ref\|NP_534035.1\| hypothetical protein Atu3539 [Agrobacterium tumefaciens str. C58], gi\|1...	199.0	[0..95]	[280..1]
gi\|15075659 - gi\|15075659\|emb\|CAC47214.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966388 - gi\|15966388\|ref\|NP_386741.1\| hypothetical protein SMc00737 [Sinorhizobium meliloti 1021]	199.0	[0..95]	[281..1]
gi\|86283469, gi\|... - gi\|86359367\|ref\|YP_471259.1\| putative endonuclease protein [Rhizobium etli CFN 42], gi\|86283469\|gb\|A...	198.0	[0..95]	[280..1]
gi\|85375659, gi\|... - gi\|85375659\|ref\|YP_459721.1\| HNH endonuclease family protein [Erythrobacter litoralis HTCC2594], gi\|...	197.0	[0..64]	[281..4]
gi\|115258695, gi... - gi\|116254047\|ref\|YP_769885.1\| putative endonuclease family protein [Rhizobium leguminosarum bv. vici...	197.0	[0..95]	[280..1]
gi\|113872532, gi... - gi\|113872532\|ref\|ZP_01412661.1\| conserved hypothetical protein [Sinorhizobium medicae WSM419], gi\|11...	195.0	[0..81]	[281..31]
gi\|78387357, gi\|... - gi\|90422135\|ref\|YP_530505.1\| HNH endonuclease [Rhodopseudomonas palustris BisB18], gi\|90104149\|gb\|AB...	195.0	[0..103]	[280..9]
gi\|91180503, gi\|... - gi\|91221689\|ref\|ZP_01257386.1\| HNH endonuclease family protein [Psychroflexus torquis ATCC 700755], ...	194.0	[0..89]	[280..4]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKVAAPLA FRRDVVVRGT LGGGRRSGVS GLWSNGGGGG GRLVAPPSAP WPARARGKNR  60
   61 SGGGGRSATK DDERAGKDEA AEAVVFVDGE DDEAAIDGDD LSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.511	a.118.14	FliG
View	Download	0.310	a.24.15	FAD-dependent thiol oxidase

Predicted Domain #2

Region A:
Residues: [104-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRGLVLDLSY RPVNVVCWKR AICLEFMAKA DVLEYYDQTV SSPSGSFYIP AVLRVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.552	N/A	N/A	g.59.1	Zinc-binding domain of translation initiation factor 2 beta
View	Download	0.552	N/A	N/A	d.241.1	Description not found.
View	Download	0.423	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.406	N/A	N/A	d.26.3	Chitinase insertion domain
View	Download	0.403	N/A	N/A	d.26.3	Chitinase insertion domain
View	Download	0.381	N/A	N/A	d.26.3	Chitinase insertion domain
View	Download	0.381	N/A	N/A	d.26.3	Chitinase insertion domain
View	Download	0.364	N/A	N/A	d.26.3	Chitinase insertion domain
View	Download	0.352	N/A	N/A	a.4.11	RNA polymerase subunit RPB10
View	Download	0.315	N/A	N/A	g.59.1	Zinc-binding domain of translation initiation factor 2 beta

Predicted Domain #3

Region A:
Residues: [160-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELLQVVKRRR VKHSLSRKNI LYRDGFTCQY CSSVDNLTID HVIPTARGGK WEWENLVTAC  60
   61 SRCNSRKGQK TVEQANMKLL KVPKAPKEFD ILAVPLTKAA FRTLKRSQGL PEEWLQYLAR 120
  121 PSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits