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View Structure Prediction Details

Protein: gi|125599131, gi...
Organism: Oryza sativa Japonica Group
Length: 943 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125599131, gi....

Description E-value Query
Range
Subject
Range
gi|108711429 - gi|108711429|gb|ABF99224.1| expressed protein [Oryza sativa (japonica cultivar-group)]
1099.0 [0..1] [943..1]
gi|25513500, gi|... - gi|5734747|gb|AAD50012.1|AC007651_7 Hypothetical protein [Arabidopsis thaliana], pir||C86308 F20D23....
944.0 [0..17] [942..39]
gi|10433758 - gi|10433758|dbj|BAB14024.1| unnamed protein product [Homo sapiens]
381.0 [0..9] [461..1]
gi|73975777 - gi|73975777|ref|XP_532428.2| PREDICTED: similar to zinc finger, C3HC type 1 [Canis familiaris]
379.0 [0..6] [461..85]
gi|109068148 - gi|109068148|ref|XP_001094530.1| PREDICTED: similar to zinc finger, C3HC type 1 [Macaca mulatta]
378.0 [0..9] [461..1]
NIPA_PONAB - Nuclear-interacting partner of ALK OS=Pongo abelii GN=ZC3HC1 PE=2 SV=1
NIPA_PONPY - Nuclear-interacting partner of ALK - Pongo pygmaeus (Orangutan)
377.0 [0..9] [461..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEVRSSSA APPDPPPRSA SPPATPVASS AGASSPPAQT NAASIDWLGG EPISKVESSS  60
   61 QIAPHAPRPS LSTNA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGAAVDFSQP SCRPWERGDL LRRLATFKSS TWASKPKAAS SLACARRGWV NIEMDKIACE  60
   61 SCGAHLIFTA LTSWSPAEVA NAGEAFAEQL DASHLGDCPW RGNSCADSLV QFHLTPSALV 120
  121 GGFKDRCDGL LQFISLPVIA 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 64.537602
Match: PF07967.5
Description: No description for PF07967.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [216-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSAIESMKLT RSPQIDRVLS QAITILSGEL GYKTDSTTGI DINHQDESCS YSQAQKLISL  60
   61 CGWEPRWLPN VQDWEENSTR SAKHTASADP DQIHSRLPEH KQNSY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [321-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASVKKDKGK GKIHVKDSGC SMRSPLLDCS LCGATVRIWD FRSVPRPSHL SINNIDAPDM  60
   61 RKGVLTRGIS ATSGINGWVA EGTERENVEG RGEAGTDEGK SLSNAQVDLN LTMAGGLPST 120
  121 HSVMPSMHDH FNDGGMGRDL MIGQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [465-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTGSELGGFA ASFESRGPSS RKRNLEEGGS TADKPLNRLH PADSIEGTVI DRDGDEVDDG  60
   61 AQDSDIRSNK RPRGFNLFDV NQPSSSGAGP SRNLSFDLDI DVNKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [570-692]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTYKAEGPSA LHNPSASMRA SSVIAMDTVH SAEENSTESV EYHPCDVDDV HKPSSAVRSG  60
   61 GMSEALDLNY SNQAPQSSFV QPAAESNARE IGGSSMNGGE EVLNAETAPA FARDQLSLGV 120
  121 SGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [693-785]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVGMGASHEA EIHGVDVSEH KTDSVVGDVE PAPELTENMG NTGESAPGPG MMDEFVPEDV  60
   61 GREEPQGDSQ DVASRLVGRA DSGSKICGST KAD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [786-943]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVESGEKMSH GIGHESNLQH SLSRNARVYS GIDLSKDEVT QIAKLPANDD YDPGDDLAAN  60
   61 GGNDYEAGLP EFDPISHHNN YCPWVNGHVA AACCINTGSS TSTGLSGWQL TVDALETIQS 120
  121 LAQAQNQIMP SDSAASLYKD DHVAPSRKLL KRASHSKC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle